Merge pull request #1560 from phac-nml/fix-analysis-text-preview #6546
joshsadamci-test.yml
on: push
docs-build
5m 28s
Matrix: gradle-build
Annotations
18 errors and 8 warnings
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SequencingRunServiceImplIT.testDeleteFilesOnFilesystem():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/SequencingRunServiceImplIT.java#L293
org.opentest4j.AssertionFailedError: Sequence file should exist on the file system ==> expected: <true> but was: <false>
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SequencingRunServiceImplIT.testAddSequenceFileToMiseqRunAsSequencer():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/SequencingRunServiceImplIT.java#L65
org.opentest4j.AssertionFailedError: Saved miseq run should have seqence file ==> expected: <true> but was: <false>
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AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessPhylogenomicsPairedNoParameters():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L862
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 11/1/testReference7754712785591470770.fasta does not exist
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AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessAssemblyAnnotation():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1244
org.opentest4j.AssertionFailedError: annotations log should be correct ==> expected: <true> but was: <false>
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AnalysisExecutionServiceGalaxyIT.testCleanupCompletedAnalysisFailGalaxy():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1558
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 25/1/testReference11025791994734100416.fasta does not exist
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AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessAssemblyAnnotation():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1244
org.opentest4j.AssertionFailedError: annotations log should be correct ==> expected: <true> but was: <false>
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AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccessNoCleanupAge():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L191
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 32/1/testReference14559559099855886774.fasta does not exist
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AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccessTwoSubmissions():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L215
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 33/1/testReference11607548947378636893.fasta does not exist
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LoginPageLdapNoServerIT.testLoginNoLdapServer():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/LoginPageLdapNoServerIT.java#L41
org.opentest4j.AssertionFailedError: expected: <http://127.0.0.1:33609/irida/login?ldap-error=6> but was: <http://127.0.0.1:33609/irida/login?error=true>
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AnalysisDetailsPageIT.testUnknownPipelineOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L450
org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>
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AnalysisDetailsPageIT.testOutputFiles():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L139
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Output File Preview'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az803-144', ip: '10.1.0.4', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:33511}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:33511/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 6116af93ce6c0c3faf8236b0743828ea
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AnalysisDetailsPageIT.testSistrOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L285
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "1" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az803-144', ip: '10.1.0.4', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:33511}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:33511/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 6116af93ce6c0c3faf8236b0743828ea
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AnalysisDetailsPageIT.testProvenance():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L206
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Provenance'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az803-144', ip: '10.1.0.4', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:33511}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:33511/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 6116af93ce6c0c3faf8236b0743828ea
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AnalysisDetailsPageIT.testSamplesPage():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L236
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Samples'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az803-144', ip: '10.1.0.4', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:33511}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:33511/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 6116af93ce6c0c3faf8236b0743828ea
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AnalysisDetailsPageIT.testPipelineResultsWithoutSpecialTab():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L193
org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>
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AnalysisDetailsPageIT.testTabRoutingAnalysisCompleted():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L316
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az803-144', ip: '10.1.0.4', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:33511}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:33511/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 6116af93ce6c0c3faf8236b0743828ea
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AnalysisDetailsPageIT.testTreeOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L379
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az803-144', ip: '10.1.0.4', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:33511}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:33511/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 6116af93ce6c0c3faf8236b0743828ea
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AnalysisDetailsPageIT.testAnalysisDetails():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L73
org.opentest4j.AssertionFailedError: The correct details are displayed for the analysis ==> expected: <true> but was: <false>
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gradle-build (file_system_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docs-build
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (open_api_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (rest_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (service_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (galaxy_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (galaxy_pipeline_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (ui_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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