Merge pull request #1561 from phac-nml/update-jena-tdb-text #6544
ericennsci-test.yml
on: push
docs-build
4m 41s
Matrix: gradle-build
Annotations
16 errors and 8 warnings
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gradle-build (file_system_testing)
Process completed with exit code 1.
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AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessPhylogenomicsPaired():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L597
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 6/1/testReference2130236030141417930.fasta does not exist
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AnalysisExecutionServiceGalaxyIT.testExecuteAnalysisSuccess():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L247
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 21/1/testReference5762349094110099328.fasta does not exist
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AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessPhylogenomics():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L505
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 23/1/testReference7754043069732841404.fasta does not exist
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AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccessNoCleanupAge():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L191
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 32/1/testReference10380790143384273152.fasta does not exist
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AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunFailInvalidWorkflowStatus():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L306
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 38/1/testReference8918549937027352268.fasta does not exist
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CartPageIT.addAndRemoveAssociatedProjectSamplesToCart():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/CartPageIT.java#L472
org.openqa.selenium.TimeoutException: java.util.concurrent.TimeoutException
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1438-203', ip: '10.1.0.30', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Command: [e2bc6a1b5a492b0cf8bf027454b95ee7, get {url=http://127.0.0.1:41133/irida/logout}]
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:38301}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:38301/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: e2bc6a1b5a492b0cf8bf027454b95ee7
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LoginPageLdapNoServerIT.testLoginNoLdapServer():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/LoginPageLdapNoServerIT.java#L41
org.opentest4j.AssertionFailedError: expected: <http://127.0.0.1:39577/irida/login?ldap-error=6> but was: <http://127.0.0.1:39577/irida/login?error=true>
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AnalysisDetailsPageIT.testUnknownPipelineOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L450
org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>
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AnalysisDetailsPageIT.testOutputFiles():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L139
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Output File Preview'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1438-203', ip: '10.1.0.30', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:38301}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:38301/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: e2bc6a1b5a492b0cf8bf027454b95ee7
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AnalysisDetailsPageIT.testSistrOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L285
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "1" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1438-203', ip: '10.1.0.30', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:38301}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:38301/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: e2bc6a1b5a492b0cf8bf027454b95ee7
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AnalysisDetailsPageIT.testProvenance():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L206
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Provenance'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1438-203', ip: '10.1.0.30', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:38301}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:38301/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: e2bc6a1b5a492b0cf8bf027454b95ee7
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AnalysisDetailsPageIT.testSamplesPage():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L236
org.openqa.selenium.NoSuchElementException: no such element: Unable to locate element: {"method":"css selector","selector":"span[title='Samples']"}
(Session info: chrome=131.0.6778.108)
For documentation on this error, please visit: https://selenium.dev/exceptions/#no_such_element
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1438-203', ip: '10.1.0.30', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Command: [e2bc6a1b5a492b0cf8bf027454b95ee7, findChildElement {id=f.D14FF1CFF93DC73D098C57B29AEAC6AD.d.A48120E8270CE79591D9EBBF545A3BD3.e.3795, using=css selector, value=span[title='Samples']}]
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:38301}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:38301/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: e2bc6a1b5a492b0cf8bf027454b95ee7
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AnalysisDetailsPageIT.testPipelineResultsWithoutSpecialTab():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L193
org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>
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AnalysisDetailsPageIT.testTabRoutingAnalysisCompleted():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L316
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1438-203', ip: '10.1.0.30', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:38301}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:38301/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: e2bc6a1b5a492b0cf8bf027454b95ee7
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AnalysisDetailsPageIT.testTreeOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L379
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1438-203', ip: '10.1.0.30', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:38301}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:38301/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: e2bc6a1b5a492b0cf8bf027454b95ee7
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gradle-build (open_api_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docs-build
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (file_system_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (rest_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (service_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (galaxy_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (galaxy_pipeline_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (ui_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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