java.sql.SQLIntegrityConstraintViolationException: Cannot delete or update a parent row: a foreign key constraint fails (`irida_integration_test`.`qc_entry`, CONSTRAINT `FK_SEQOBJECT_QC_ENTRY` FOREIGN KEY (`sequencingObject_id`) REFERENCES `sequencing_object` (`id`))

AnalysisExecutionServiceGalaxyIT.testExecuteAnalysisFailRemoteWorkflowId(): src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1

java.sql.SQLIntegrityConstraintViolationException: Cannot delete or update a parent row: a foreign key constraint fails (`irida_integration_test`.`analysis_submission`, CONSTRAINT `FK_ANALYIS_SUBMISSION_SUBMITTER_ID` FOREIGN KEY (`submitter`) REFERENCES `user` (`id`))

AnalysisExecutionServiceGalaxyIT.testExecuteAnalysisSuccess(): src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L247

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 20/1/testReference10266834866479948316.fasta does not exist

AnalysisExecutionServiceGalaxyIT.testCleanupCompletedAnalysisSuccess(): src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1454

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 25/1/testReference10711491422490249452.fasta does not exist

AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccessOneSubmissionOneError(): src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L247

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 29/1/testReference8883750782702742938.fasta does not exist

AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunFailErrorWithJob(): src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L402

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 34/1/testReference14029271464463535935.fasta does not exist

LoginPageLdapNoServerIT.testLoginNoLdapServer(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/LoginPageLdapNoServerIT.java#L41

org.opentest4j.AssertionFailedError: expected: <http://127.0.0.1:41279/irida/login?ldap-error=6> but was: <http://127.0.0.1:41279/irida/login?error=true>

AnalysisDetailsPageIT.testUnknownPipelineOutput(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L450

org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>

AnalysisDetailsPageIT.testOutputFiles(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L139

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Output File Preview'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1197-956', ip: '10.1.0.41', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.85, chrome: {chromedriverVersion: 131.0.6778.85 (3d81e41b6f3a..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:40047}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:40047/devtoo..., se:cdpVersion: 131.0.6778.85, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: fcb011da69a3e5b01953e3823e95f961

AnalysisDetailsPageIT.testSistrOutput(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L285

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "1" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1197-956', ip: '10.1.0.41', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.85, chrome: {chromedriverVersion: 131.0.6778.85 (3d81e41b6f3a..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:40047}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:40047/devtoo..., se:cdpVersion: 131.0.6778.85, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: fcb011da69a3e5b01953e3823e95f961

AnalysisDetailsPageIT.testProvenance(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L206

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Provenance'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1197-956', ip: '10.1.0.41', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.85, chrome: {chromedriverVersion: 131.0.6778.85 (3d81e41b6f3a..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:40047}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:40047/devtoo..., se:cdpVersion: 131.0.6778.85, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: fcb011da69a3e5b01953e3823e95f961

AnalysisDetailsPageIT.testSamplesPage(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L236

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Samples'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1197-956', ip: '10.1.0.41', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.85, chrome: {chromedriverVersion: 131.0.6778.85 (3d81e41b6f3a..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:40047}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:40047/devtoo..., se:cdpVersion: 131.0.6778.85, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: fcb011da69a3e5b01953e3823e95f961

AnalysisDetailsPageIT.testPipelineResultsWithoutSpecialTab(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L193

org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>

AnalysisDetailsPageIT.testTabRoutingAnalysisCompleted(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L316

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1197-956', ip: '10.1.0.41', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.85, chrome: {chromedriverVersion: 131.0.6778.85 (3d81e41b6f3a..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:40047}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:40047/devtoo..., se:cdpVersion: 131.0.6778.85, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: fcb011da69a3e5b01953e3823e95f961

AnalysisDetailsPageIT.testTreeOutput(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L379

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1197-956', ip: '10.1.0.41', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.85, chrome: {chromedriverVersion: 131.0.6778.85 (3d81e41b6f3a..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:40047}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:40047/devtoo..., se:cdpVersion: 131.0.6778.85, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: fcb011da69a3e5b01953e3823e95f961

AnalysisDetailsPageIT.testAnalysisDetails(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L73

org.opentest4j.AssertionFailedError: The correct details are displayed for the analysis ==> expected: <true> but was: <false>

gradle-build (open_api_testing)

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

docs-build