chore: Fixed parameters

phac-nml · Sep 11, 2024 · 8e64892 · 8e64892
1 parent b76166a
commit 8e64892
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/app/components/nextflow/samplesheet/column_component.rb b/app/components/nextflow/samplesheet/column_component.rb
@@ -39,7 +39,7 @@ def render_cell_type(property, entry, sample, fields, index) # rubocop:disable M
 
       def render_fastq_cell(sample, property, entry, fields, index)
         direction = get_fastq_direction(property)
-        files = get_fastq_files(sample, direction, pe_only: property['pe_only'].present?)
+        files = get_fastq_files(entry, sample, direction, pe_only: property['pe_only'].present?)
         data = get_fastq_data(files, direction, index, property)
         render_file_cell(property, entry, fields, files, @required, data, files&.first)
       end
@@ -50,7 +50,7 @@ def get_fastq_direction(property)
         property.match(/fastq_(\d+)/)[1].to_i == 1 ? :pe_forward : :pe_reverse
       end
 
-      def get_fastq_files(sample, direction, pe_only: false)
+      def get_fastq_files(entry, sample, direction, pe_only: false)
         singles = filter_files_by_pattern(sample.sorted_files[:singles] || [],
                                           entry['pattern'] || "/^\S+.f(ast)?q(.gz)?$/")