Skip to content

Commit

Permalink
Update tests for NCBI BLAST+ 2.14.1
Browse files Browse the repository at this point in the history 
$ tools/ncbi_blast_plus/update_test_files.sh
  • Loading branch information
@peterjc
peterjc committed Sep 11, 2023
1 parent 851e383 commit 8950e86
Show file tree
Hide file tree
Showing 10 changed files with 61 additions and 61 deletions.
2 changes: 1 addition & 1 deletion test-data/blastn_chimera_vs_three_human_max1.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -346,7 +346,7 @@ Effective search space used: 106299490


Database: Just 3 human mRNA sequences
Posted date: Sep 9, 2020 11:23 PM
Posted date: Sep 11, 2023 6:30 PM
Number of letters in database: 10,732
Number of sequences in database: 3

Expand Down
Binary file modified test-data/cd00003_and_cd00008.pin
View file
Binary file not shown.
12 changes: 6 additions & 6 deletions test-data/deltablast_four_human_vs_rhodopsin.tabular
View file
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
P08100 NP_001009242.1 96.552 348 12 0 1 348 1 348 1.35e-145 405
P08100 P56514.1 84.795 342 51 1 1 341 1 342 7.03e-128 360
P08100 ADB45242.1 94.817 328 17 0 11 338 1 328 2.24e-129 363
P08100 ADB45229.1 94.817 328 17 0 11 338 1 328 4.29e-122 344
P08100 0811197A 93.103 348 23 1 1 348 1 347 7.31e-143 398
P08100 BAB21486.1 82.164 342 60 1 1 341 1 342 2.14e-127 359
P08100 NP_001009242.1 96.552 348 12 0 1 348 1 348 4.79e-146 406
P08100 P56514.1 84.795 342 51 1 1 341 1 342 3.20e-128 361
P08100 ADB45242.1 94.817 328 17 0 11 338 1 328 7.59e-130 364
P08100 ADB45229.1 94.817 328 17 0 11 338 1 328 1.25e-122 346
P08100 0811197A 93.103 348 23 1 1 348 1 347 4.22e-143 398
P08100 BAB21486.1 82.164 342 60 1 1 341 1 342 9.21e-128 360
84 changes: 42 additions & 42 deletions test-data/deltablast_four_human_vs_rhodopsin.xml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>42</Statistics_hsp-len>
<Statistics_eff-space>657748</Statistics_eff-space>
<Statistics_kappa>0.0455430834400978</Statistics_kappa>
<Statistics_kappa>0.045541834966265</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -51,7 +51,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>42</Statistics_hsp-len>
<Statistics_eff-space>657748</Statistics_eff-space>
<Statistics_kappa>0.0455430834400978</Statistics_kappa>
<Statistics_kappa>0.045541834966265</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -71,7 +71,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>42</Statistics_hsp-len>
<Statistics_eff-space>657748</Statistics_eff-space>
<Statistics_kappa>0.0455430834400978</Statistics_kappa>
<Statistics_kappa>0.045541834966265</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -91,7 +91,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>42</Statistics_hsp-len>
<Statistics_eff-space>657748</Statistics_eff-space>
<Statistics_kappa>0.0455430834400978</Statistics_kappa>
<Statistics_kappa>0.045541834966265</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -111,7 +111,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>42</Statistics_hsp-len>
<Statistics_eff-space>657748</Statistics_eff-space>
<Statistics_kappa>0.0455430834400978</Statistics_kappa>
<Statistics_kappa>0.045541834966265</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -131,7 +131,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>42</Statistics_hsp-len>
<Statistics_eff-space>657748</Statistics_eff-space>
<Statistics_kappa>0.0455430834400978</Statistics_kappa>
<Statistics_kappa>0.045541834966265</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -151,7 +151,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>50</Statistics_hsp-len>
<Statistics_eff-space>1954249</Statistics_eff-space>
<Statistics_kappa>0.0406698904620055</Statistics_kappa>
<Statistics_kappa>0.0406664556690553</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -171,7 +171,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>50</Statistics_hsp-len>
<Statistics_eff-space>1954249</Statistics_eff-space>
<Statistics_kappa>0.0406698904620055</Statistics_kappa>
<Statistics_kappa>0.0406664556690553</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -191,7 +191,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>50</Statistics_hsp-len>
<Statistics_eff-space>1954249</Statistics_eff-space>
<Statistics_kappa>0.0406698904620055</Statistics_kappa>
<Statistics_kappa>0.0406664556690553</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -211,7 +211,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>50</Statistics_hsp-len>
<Statistics_eff-space>1954249</Statistics_eff-space>
<Statistics_kappa>0.0406698904620055</Statistics_kappa>
<Statistics_kappa>0.0406664556690553</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -231,7 +231,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>50</Statistics_hsp-len>
<Statistics_eff-space>1954249</Statistics_eff-space>
<Statistics_kappa>0.0406698904620055</Statistics_kappa>
<Statistics_kappa>0.0406664556690553</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -251,7 +251,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>50</Statistics_hsp-len>
<Statistics_eff-space>1954249</Statistics_eff-space>
<Statistics_kappa>0.0406698904620055</Statistics_kappa>
<Statistics_kappa>0.0406664556690553</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -271,7 +271,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>51</Statistics_hsp-len>
<Statistics_eff-space>2333243</Statistics_eff-space>
<Statistics_kappa>0.0434921973217113</Statistics_kappa>
<Statistics_kappa>0.0437261208412026</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -291,7 +291,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>51</Statistics_hsp-len>
<Statistics_eff-space>2333243</Statistics_eff-space>
<Statistics_kappa>0.0434921973217113</Statistics_kappa>
<Statistics_kappa>0.0437261208412026</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -311,7 +311,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>51</Statistics_hsp-len>
<Statistics_eff-space>2333243</Statistics_eff-space>
<Statistics_kappa>0.0434921973217113</Statistics_kappa>
<Statistics_kappa>0.0437261208412026</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -331,7 +331,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>51</Statistics_hsp-len>
<Statistics_eff-space>2333243</Statistics_eff-space>
<Statistics_kappa>0.0434921973217113</Statistics_kappa>
<Statistics_kappa>0.0437261208412026</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -351,7 +351,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>51</Statistics_hsp-len>
<Statistics_eff-space>2333243</Statistics_eff-space>
<Statistics_kappa>0.0434921973217113</Statistics_kappa>
<Statistics_kappa>0.0437261208412026</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -371,7 +371,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>51</Statistics_hsp-len>
<Statistics_eff-space>2333243</Statistics_eff-space>
<Statistics_kappa>0.0434921973217113</Statistics_kappa>
<Statistics_kappa>0.0437261208412026</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -393,9 +393,9 @@
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>405.168</Hsp_bit-score>
<Hsp_score>1041</Hsp_score>
<Hsp_evalue>1.35477e-145</Hsp_evalue>
<Hsp_bit-score>406.31</Hsp_bit-score>
<Hsp_score>1044</Hsp_score>
<Hsp_evalue>4.78937e-146</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>348</Hsp_query-to>
<Hsp_hit-from>1</Hsp_hit-from>
Expand All @@ -419,7 +419,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>41</Statistics_hsp-len>
<Statistics_eff-space>556591</Statistics_eff-space>
<Statistics_kappa>0.0555169114045818</Statistics_kappa>
<Statistics_kappa>0.0558537300068921</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -440,9 +440,9 @@
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>360.485</Hsp_bit-score>
<Hsp_score>925</Hsp_score>
<Hsp_evalue>7.02689e-128</Hsp_evalue>
<Hsp_bit-score>361.242</Hsp_bit-score>
<Hsp_score>927</Hsp_score>
<Hsp_evalue>3.19834e-128</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>341</Hsp_query-to>
<Hsp_hit-from>1</Hsp_hit-from>
Expand All @@ -466,7 +466,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>41</Statistics_hsp-len>
<Statistics_eff-space>556591</Statistics_eff-space>
<Statistics_kappa>0.0555169114045818</Statistics_kappa>
<Statistics_kappa>0.0558537300068921</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -487,9 +487,9 @@
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>363.181</Hsp_bit-score>
<Hsp_score>932</Hsp_score>
<Hsp_evalue>2.24156e-129</Hsp_evalue>
<Hsp_bit-score>364.709</Hsp_bit-score>
<Hsp_score>936</Hsp_score>
<Hsp_evalue>7.59412e-130</Hsp_evalue>
<Hsp_query-from>11</Hsp_query-from>
<Hsp_query-to>338</Hsp_query-to>
<Hsp_hit-from>1</Hsp_hit-from>
Expand All @@ -513,7 +513,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>41</Statistics_hsp-len>
<Statistics_eff-space>556591</Statistics_eff-space>
<Statistics_kappa>0.0555169114045818</Statistics_kappa>
<Statistics_kappa>0.0558537300068921</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -534,9 +534,9 @@
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>344.691</Hsp_bit-score>
<Hsp_score>884</Hsp_score>
<Hsp_evalue>4.29181e-122</Hsp_evalue>
<Hsp_bit-score>346.219</Hsp_bit-score>
<Hsp_score>888</Hsp_score>
<Hsp_evalue>1.24922e-122</Hsp_evalue>
<Hsp_query-from>11</Hsp_query-from>
<Hsp_query-to>338</Hsp_query-to>
<Hsp_hit-from>1</Hsp_hit-from>
Expand All @@ -560,7 +560,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>41</Statistics_hsp-len>
<Statistics_eff-space>556591</Statistics_eff-space>
<Statistics_kappa>0.0555169114045818</Statistics_kappa>
<Statistics_kappa>0.0558537300068921</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -581,9 +581,9 @@
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>398.234</Hsp_bit-score>
<Hsp_score>1023</Hsp_score>
<Hsp_evalue>7.30696e-143</Hsp_evalue>
<Hsp_bit-score>398.992</Hsp_bit-score>
<Hsp_score>1025</Hsp_score>
<Hsp_evalue>4.2239e-143</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>348</Hsp_query-to>
<Hsp_hit-from>1</Hsp_hit-from>
Expand All @@ -607,7 +607,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>41</Statistics_hsp-len>
<Statistics_eff-space>556591</Statistics_eff-space>
<Statistics_kappa>0.0555169114045818</Statistics_kappa>
<Statistics_kappa>0.0558537300068921</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand All @@ -628,9 +628,9 @@
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>359.329</Hsp_bit-score>
<Hsp_score>922</Hsp_score>
<Hsp_evalue>2.13718e-127</Hsp_evalue>
<Hsp_bit-score>360.086</Hsp_bit-score>
<Hsp_score>924</Hsp_score>
<Hsp_evalue>9.21171e-128</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>341</Hsp_query-to>
<Hsp_hit-from>1</Hsp_hit-from>
Expand All @@ -654,7 +654,7 @@
<Statistics_db-len>0</Statistics_db-len>
<Statistics_hsp-len>41</Statistics_hsp-len>
<Statistics_eff-space>556591</Statistics_eff-space>
<Statistics_kappa>0.0555169114045818</Statistics_kappa>
<Statistics_kappa>0.0558537300068921</Statistics_kappa>
<Statistics_lambda>0.267</Statistics_lambda>
<Statistics_entropy>0.14</Statistics_entropy>
</Statistics>
Expand Down
Loading

0 comments on commit 8950e86

Please sign in to comment.