Home

snakemakelib

snakemake library for various applications, with a focus on bioinformatics and next-generation sequencing.

Comparison with biomake

snakemakelib is basically a port of the rules in biomake to snakemake. The design principles are similar in that my aim is to compile a library of rules that can be reused and configured via a simple configuration interface.

Disclaimer

Use the rules at your own risk, and make sure you understand them before running any commands. I take no responsibility if you'd happen to run a snakemake clean in an inappropriate location, removing precious data in the process. You have been warned!

Introduction

Installation