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Snakemake object #286

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nsheff opened this issue Apr 19, 2019 · 0 comments
Closed

Snakemake object #286

nsheff opened this issue Apr 19, 2019 · 0 comments
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@vreuter

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nsheff commented Apr 19, 2019

From snakemake-workflows/dna-seq-gatk-variant-calling#6

We've done most of the naming issues, but now just to wrap it up, we should make a new object, SnakeProject(peppy.Project).

This object should handle:

  • renaming the sample_name to sample
  • rename subsample_name to unit
  • make sure the id columns have indexes
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