Update contribution notes

.all-contributorsrc

@@ -0,0 +1,65 @@
+{
+  "projectName": "BaSiCPy",
+  "projectOwner": "peng-lab",
+  "repoType": "github",
+  "repoHost": "https://github.com",
+  "files": [
+    "README.md"
+  ],
+  "imageSize": 100,
+  "commit": true,
+  "commitConvention": "gitmoji",
+  "contributors": [
+    {
+      "login": "Nicholas-Schaub",
+      "name": "Nicholas-Schaub",
+      "avatar_url": "https://avatars.githubusercontent.com/u/15925882?v=4",
+      "profile": "https://github.com/Nicholas-Schaub",
+      "contributions": [
+        "code",
+        "test",
+        "review",
+        "ideas",
+        "projectManagement"
+      ]
+    },
+    {
+      "login": "tdmorello",
+      "name": "Tim Morello",
+      "avatar_url": "https://avatars.githubusercontent.com/u/34800427?v=4",
+      "profile": "https://github.com/tdmorello",
+      "contributions": [
+        "review",
+        "test",
+        "ideas",
+        "code"
+      ]
+    },
+    {
+      "login": "tying84",
+      "name": "Tingying Peng",
+      "avatar_url": "https://avatars.githubusercontent.com/u/11461947?v=4",
+      "profile": "https://github.com/tying84",
+      "contributions": [
+        "code",
+        "data",
+        "financial",
+        "talk"
+      ]
+    },
+    {
+      "login": "yfukai",
+      "name": "Yohsuke T. Fukai",
+      "avatar_url": "https://avatars.githubusercontent.com/u/5919272?v=4",
+      "profile": "https://github.com/yfukai",
+      "contributions": [
+        "code",
+        "research",
+        "question",
+        "test",
+        "ideas"
+      ]
+    }
+  ],
+  "contributorsPerLine": 7
+}

.gitignore

@@ -154,3 +154,4 @@ cython_debug/
 .vscode/
 .DS_Store
 scratch/
+node_modules/

README.md

@@ -1,10 +1,11 @@
 # BaSiCPy
-
 A python package for background and shading correction of optical microscopy images
-
 [![License](https://img.shields.io/pypi/l/python-basic.svg)](https://github.com/napari/napari/raw/main/LICENSE)
 [![Python Version](https://img.shields.io/pypi/pyversions/python-basic.svg)](https://python.org)
 [![PyPI](https://img.shields.io/pypi/v/python-basic.svg)](https://pypi.org/project/python-basic)
+<!-- ALL-CONTRIBUTORS-BADGE:START - Do not remove or modify this section -->
+[![All Contributors](https://img.shields.io/badge/all_contributors-4-orange.svg?style=flat-square)](#contributors-)
+<!-- ALL-CONTRIBUTORS-BADGE:END -->
 
 BaSiCPy is a python package for background and shading correction of optical microscopy images. It is developed based on the Matlab version of [BaSiC](https://github.com/marrlab/BaSiC) tool.
 
@@ -58,3 +59,46 @@ python -m venv venv
 source venv/bin/activate
 pip install -e '.[dev]'
 ```
+
+## Contributors
+
+### Current version
+<!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section -->
+<!-- prettier-ignore-start -->
+<!-- markdownlint-disable -->
+<table>
+  <tr>
+    <td align="center"><a href="https://github.com/Nicholas-Schaub"><img src="https://avatars.githubusercontent.com/u/15925882?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Nicholas-Schaub</b></sub></a><br /><a href="https://github.com/peng-lab/BaSiCPy/commits?author=Nicholas-Schaub" title="Code">💻</a> <a href="https://github.com/peng-lab/BaSiCPy/commits?author=Nicholas-Schaub" title="Tests">⚠️</a> <a href="https://github.com/peng-lab/BaSiCPy/pulls?q=is%3Apr+reviewed-by%3ANicholas-Schaub" title="Reviewed Pull Requests">👀</a> <a href="#ideas-Nicholas-Schaub" title="Ideas, Planning, & Feedback">🤔</a> <a href="#projectManagement-Nicholas-Schaub" title="Project Management">📆</a></td>
+    <td align="center"><a href="https://github.com/tdmorello"><img src="https://avatars.githubusercontent.com/u/34800427?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Tim Morello</b></sub></a><br /><a href="https://github.com/peng-lab/BaSiCPy/pulls?q=is%3Apr+reviewed-by%3Atdmorello" title="Reviewed Pull Requests">👀</a> <a href="https://github.com/peng-lab/BaSiCPy/commits?author=tdmorello" title="Tests">⚠️</a> <a href="#ideas-tdmorello" title="Ideas, Planning, & Feedback">🤔</a> <a href="https://github.com/peng-lab/BaSiCPy/commits?author=tdmorello" title="Code">💻</a></td>
+    <td align="center"><a href="https://github.com/tying84"><img src="https://avatars.githubusercontent.com/u/11461947?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Tingying Peng</b></sub></a><br /><a href="https://github.com/peng-lab/BaSiCPy/commits?author=tying84" title="Code">💻</a> <a href="#data-tying84" title="Data">🔣</a> <a href="#financial-tying84" title="Financial">💵</a> <a href="#talk-tying84" title="Talks">📢</a></td>
+    <td align="center"><a href="https://github.com/yfukai"><img src="https://avatars.githubusercontent.com/u/5919272?v=4?s=100" width="100px;" alt=""/><br /><sub><b>Yohsuke T. Fukai</b></sub></a><br /><a href="https://github.com/peng-lab/BaSiCPy/commits?author=yfukai" title="Code">💻</a> <a href="#research-yfukai" title="Research">🔬</a> <a href="#question-yfukai" title="Answering Questions">💬</a> <a href="https://github.com/peng-lab/BaSiCPy/commits?author=yfukai" title="Tests">⚠️</a> <a href="#ideas-yfukai" title="Ideas, Planning, & Feedback">🤔</a></td>
+  </tr>
+</table>
+
+<!-- markdownlint-restore -->
+<!-- prettier-ignore-end -->
+
+<!-- ALL-CONTRIBUTORS-LIST:END -->
+- Nicholas Schaub (@Nicholas-Schaub)
+    - General mentoring, technology selection and project management
+    - Designing and implementing core structure of the package
+    - Code review and advising
+    - Providing tests
+- Tim Morello (@tdmorello)
+    - Designing and implementing core structure of the package
+    - Providing tests
+    - Code review
+- Tingying Peng (@tying84)
+    - General comments and financial support
+    - Reviewing theoretical calculation
+    - Providing a JAX implementation for the approximate fitting routine
+    - Providing test data and commenting on expected output
+- Yohsuke T. Fukai (@yfukai)
+    - Theoretical calculation for the optimization problem
+    - Implementation of the main fitting routine
+    - Providing tests
+    - Code review
+
+### Old version (`f3fcf19`), used as the reference implementation to check the approximate algorithm
+- Lorenz Lamm (@LorenzLamm)
+- Mohammad Mirkazemi (@Mirkazemi)