Merge dev branch to main #114
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README fix
* udpated transform method * fixed tests * fixed typo * solving problems with tests * fixed transform bug * removed tests for rescaling-fitting * removed resized transform example * added dask test * set baseline type to optinal * updated testdata * deleted notebook outputs * Update timelapse * re-organized transform part * tests running... * made the resize method changable * resize method tested * tested resize method * added comments for the transform function * minor fix * fixed fitting_weight shape bug Co-authored-by: Tim Morello <[email protected]>
* updating notebooks * updated rescaled data * updated test data * update notebooks * Fixed most unit tests * re-added reference comparison notebook * re-added test data Co-authored-by: Nicholas-Schaub <[email protected]>
* udpated transform method * fixed tests * fixed typo * solving problems with tests * fixed transform bug * removed tests for rescaling-fitting * removed resized transform example * added dask test * set baseline type to optinal * updated testdata * deleted notebook outputs * Update timelapse * re-organized transform part * tests running... * made the resize method changable * resize method tested * tested resize method * added comments for the transform function * minor fix * fixed fitting_weight shape bug * fixed dask-related bug Co-authored-by: Tim Morello <[email protected]>
* updated hashes to newer ones * changed source to main * ci experiment with dev branch * updated branch * added tests for wrong argments * updated classifier to beta * updated copyright * just added spaces * updated downsampled data to Zenodo * renamed data to datasets * typo fix... * deleted depricated tools * fixed package names ... * import fix * 👥 Update @yfukai as a contributor * added my contribution for ci... * removed deprecated routines from old DCT2d * updated tests and fixed jax version to solve problems
* updated hashes to newer ones * changed source to main * ci experiment with dev branch * updated branch * added tests for wrong argments * updated classifier to beta * updated copyright * just added spaces * updated downsampled data to Zenodo * renamed data to datasets * typo fix... * deleted depricated tools * fixed package names ... * import fix * 👥 Update @yfukai as a contributor * added my contribution for ci... * removed deprecated routines from old DCT2d * trying to add darkfield weight and changing weight for ladmap * fixed typo * added attribute * updated tests and fixed jax version to solve problems * rewrite ladmap to normalize B * working ver? * updated test data * udpated weight for darkfield * updated test data * removed print * fixed normalization const * added test to show basic does not depend on the intensity scale * small update
* updated hashes to newer ones * changed source to main * ci experiment with dev branch * updated branch * added tests for wrong argments * updated classifier to beta * updated copyright * just added spaces * updated downsampled data to Zenodo * renamed data to datasets * typo fix... * deleted depricated tools * fixed package names ... * import fix * 👥 Update @yfukai as a contributor * added my contribution for ci... * removed deprecated routines from old DCT2d * trying to add darkfield weight and changing weight for ladmap * fixed typo * added attribute * updated tests and fixed jax version to solve problems * rewrite ladmap to normalize B * working ver? * updated test data * udpated weight for darkfield * updated test data * removed print * fixed normalization const * added test to show basic does not depend on the intensity scale * small update * updated coefs * updated field names * fixed typo in log * updated the definition for self._sparse_cost_darkfield in approximate
* updated hashes to newer ones * changed source to main * ci experiment with dev branch * updated branch * added tests for wrong argments * updated classifier to beta * updated copyright * just added spaces * updated downsampled data to Zenodo * renamed data to datasets * typo fix... * deleted depricated tools * fixed package names ... * import fix * 👥 Update @yfukai as a contributor * added my contribution for ci... * removed deprecated routines from old DCT2d * trying to add darkfield weight and changing weight for ladmap * fixed typo * added attribute * updated tests and fixed jax version to solve problems * rewrite ladmap to normalize B * working ver? * updated test data * udpated weight for darkfield * updated test data * removed print * fixed normalization const * added test to show basic does not depend on the intensity scale * small update * updated coefs * updated field names * fixed typo in log * updated parameters for notebooks * added docs_build * added ci for docs * changed the notebooks so that it only installs basicpy for colab * updated docs * added pandoc in ci * fixed error typo
* Added benchmark library asv * Revert "Delete CONTRIBUTING.rst" This reverts commit 01d8fe1. * Revert "Added benchmark library asv" This reverts commit d067f04. * Deleted CONTRIBUTING.rst * Cleaned up code and logging. * Changed error message comment * Add single-step convergence warning after the loop Co-authored-by: Yohsuke T. Fukai <[email protected]>
Change log level to warning
Co-authored-by: Nicholas-Schaub <[email protected]>
Nicholas-Schaub
approved these changes
Dec 2, 2022
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as the beta version is released we merge the
devtomain!