Skip to content

Commit

Permalink
Update README.md (#49)
Browse files Browse the repository at this point in the history
* Update README.md

* Update README.md

* removed dropbox link from the link

* Update README.md

Co-authored-by: Fukai Yohsuke <[email protected]>
  • Loading branch information
yuliu96 and yfukai authored May 19, 2022
1 parent abff1e4 commit b71ade3
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ by Tingying Peng, Kurt Thorn, Timm Schroeder, Lichao Wang, Fabian J Theis, Carst
| [example_brightfield](https://github.com/peng-lab/BaSiCPy-examples/blob/main/example_brightfield.ipynb) | 100 continuous brightfield frames of a time-lapse movie of differentiating mouse hematopoietic stem cells. | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1PPiuT--gamaQBpuUdYMAmtwe5b5-eLJ5?usp=sharing) |
| [example_timelapse_nanog](https://github.com/peng-lab/BaSiCPy-examples/blob/main/example_timelapse_nanog.ipynb) | 189 continuous fluorescence frames of a time-lapse movie of differentiating mouse embryonic stem cells, which move much more slower compared to the fast moving hematopoietic stem cells, resulting in a much larger correlation between frames. Note that in this challenging case, the automatic parameters are no longer optimal, so we use the manual parameter setting (larger smooth regularization on both flat-field and dark-field) to improve BaSiC’s performance. | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/drive/1rLmkGH5Zb_kWgUZVksgt-XR3jhlWMWei?usp=sharing) |

You can also find examples of running the package at [folder Notebooks](https://github.com/peng-lab/BaSiCPy/tree/main/Notebooks).
You can also find examples of running the package at [folder Notebooks](https://github.com/peng-lab/BaSiCPy/tree/main/Notebooks). Data used in the examples and a description can be downloaded from [Zenodo](https://doi.org/10.5281/zenodo.6334809).

---

Expand Down

0 comments on commit b71ade3

Please sign in to comment.