MNT: Misc updates #33
Workflow file for this run
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| name: Cookiecutter Test | |
| on: | |
| push: | |
| pull_request: | |
| env: | |
| MPLBACKEND: "agg" | |
| QT_QPA_PLATFORM: "offscreen" | |
| PROJECT_DIR: "project_name" | |
| IMPORT_NAME: "project_name" | |
| ENTRYPOINT_NAME: "project-name" | |
| PYTHON_VERSION: "3.9" | |
| MAMBA_ROOT_PREFIX: "~/micromamba" | |
| CONDARC_SOURCE: | | |
| notify_outdated_conda: false | |
| pkgs_dirs: | |
| - ~/conda_pkgs_dir | |
| channels: | |
| - conda-forge | |
| add_pip_as_python_dependency: true | |
| auto_activate_base: true | |
| auto_update_conda: false | |
| channel_priority: strict | |
| always_yes: true | |
| changeps1: false | |
| jobs: | |
| pip-test: | |
| name: "Python 3.9: pip" | |
| runs-on: ubuntu-20.04 | |
| defaults: | |
| run: | |
| # The following allows for each run step to utilize ~/.bash_profile | |
| # for setting up the per-step initial state. | |
| # --login: a login shell. Source ~/.bash_profile | |
| # -e: exit on first error | |
| # -o pipefail: piped processes are important; fail if they fail | |
| shell: bash --login -eo pipefail {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: Upgrade pip | |
| run: | | |
| pip install --upgrade pip build | |
| - name: Install cookiecutter and requirements | |
| run: | | |
| pip install -r requirements.txt | |
| - name: Check the pip packages in the test env | |
| run: | | |
| pip list | |
| - name: Configure git | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "PCDS / GitHub CI" | |
| - name: Use the cookiecutter | |
| run: | | |
| cookiecutter . --no-input --output-dir "$HOME" | |
| - name: Build wheel and source distribution | |
| run: | | |
| export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) | |
| echo "Source date epoch set to ${SOURCE_DATE_EPOCH} for reproducible build" | |
| # See: https://github.com/python/cpython/pull/5200 | |
| # And: https://reproducible-builds.org/docs/source-date-epoch/ | |
| cd "${HOME}/${PROJECT_DIR}" | |
| python -m build --sdist --wheel --outdir ./dist | |
| - name: Check the source distribution | |
| run: | | |
| cd | |
| python -m venv test-source-env | |
| source test-source-env/bin/activate | |
| cd "${HOME}/${PROJECT_DIR}" | |
| python -m pip install ./dist/*.gz | |
| cd /tmp | |
| python -c "import ${IMPORT_NAME}; print('Imported ${IMPORT_NAME} from ' + ${IMPORT_NAME}.__file__)" | |
| command -v "${ENTRYPOINT_NAME}" | |
| - name: Use the wheel for testing | |
| run: | | |
| cd "${HOME}/${PROJECT_DIR}" | |
| python -m pip install ./dist/*.whl | |
| cd /tmp | |
| python -c "import ${IMPORT_NAME}; print('Imported ${IMPORT_NAME} from ' + ${IMPORT_NAME}.__file__)" | |
| command -v "${ENTRYPOINT_NAME}" | |
| - name: After failure | |
| if: ${{ failure() }} | |
| run: | | |
| ( | |
| echo "### Pip list" | |
| echo "<details>" | |
| echo "" | |
| echo '```' | |
| pip list | egrep -v -e "^#" | |
| echo '```' | |
| echo "</details>" | |
| ) >> "$GITHUB_STEP_SUMMARY" | |
| - name: Upload the built package as an artifact | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: "pip - Cookiecutter Output" | |
| path: ~/project_name | |
| conda-test: | |
| name: "Python 3.9: conda" | |
| runs-on: ubuntu-20.04 | |
| defaults: | |
| run: | |
| # The following allows for each run step to utilize ~/.bash_profile | |
| # for setting up the per-step initial state. | |
| # --login: a login shell. Source ~/.bash_profile | |
| # -e: exit on first error | |
| # -o pipefail: piped processes are important; fail if they fail | |
| shell: bash --login -eo pipefail {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Configure git | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "PCDS / GitHub CI" | |
| - name: Set up micromamba and environment | |
| run: | | |
| cd "$HOME" | |
| mkdir logs | |
| curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj "bin/micromamba" | |
| mkdir micromamba | |
| echo "Micromamba version: $(bin/micromamba --version)" | tee "$GITHUB_STEP_SUMMARY" | |
| bin/micromamba shell hook --shell=bash >> ~/.bash_profile | |
| echo "micromamba activate" >> ~/.bash_profile | |
| - name: Configure conda for building | |
| run: | | |
| echo "${CONDARC_SOURCE}" > ~/.condarc | |
| echo "Contents of ~/.condarc:" | |
| echo "---------------------------" | |
| cat ~/.condarc | |
| echo "---------------------------" | |
| - name: Install boa for mambabuild | |
| run: | | |
| micromamba install boa conda-verify "python=${PYTHON_VERSION}" pip | |
| micromamba info | |
| - name: Check condarc | |
| run: | | |
| cat ~/.condarc | |
| - name: Install cookiecutter and requirements | |
| run: | | |
| pip install -r requirements.txt | |
| - name: Use the cookiecutter | |
| run: | | |
| cookiecutter . --no-input --output-dir "$HOME" | |
| - name: Start the next steps in the cookiecutter output | |
| run: | | |
| echo "cd \"${HOME}/${PROJECT_DIR}\"" >> ~/.bash_profile | |
| - name: Check the conda recipe | |
| run: | | |
| echo "Conda Recipe Folder':' conda-recipe" | |
| echo "The recipe to be built is as follows:" | |
| cat "conda-recipe/meta.yaml" | |
| - name: Configure setuptools-scm | |
| run: | | |
| # In v8.0.0, write_to was removed as a config option with no deprecation period | |
| # write_to makes the _version.py file get written when you check the version | |
| # we used it here to write out the file via "python -m setuptools_scm" | |
| # it was replaced with version_file, which only writes during the build | |
| micromamba install "setuptools-scm<8.0.0" | |
| python -m setuptools_scm | |
| - name: Build the conda package and create the test environment | |
| run: | | |
| conda mambabuild "conda-recipe" \ | |
| --quiet \ | |
| --output-folder "$HOME/conda-bld" \ | |
| --no-anaconda-upload \ | |
| --python "${PYTHON_VERSION}" \ | |
| --extra-deps "python==${PYTHON_VERSION}" \ | |
| --keep-old-work \ | |
| 2>&1 | tee $HOME/logs/mambabuild.txt | |
| - name: Upload the built package as an artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Python 3.9 - conda - package | |
| path: ~/conda-bld | |
| - name: Use the pre-built test environment | |
| run: | | |
| TEST_ENV_PATH=$(ls -d ${MAMBA_ROOT_PREFIX/#\~/$HOME}/conda-bld/*/*_test_env*) | |
| echo "The test path should be: ${TEST_ENV_PATH}" | |
| if [ ! -d "${TEST_ENV_PATH}" ]; then | |
| echo "Something went wrong finding the test environment path. :(" | |
| find ${MAMBA_ROOT_PREFIX/#\~/$HOME}/conda-bld -type d | |
| exit 1 | |
| fi | |
| echo "micromamba activate ${TEST_ENV_PATH}" >> ~/.bash_profile | |
| - name: Check the conda packages in the test env | |
| run: | | |
| conda list | |
| - name: Verify conda-installed package | |
| run: | | |
| cd /tmp | |
| python -c "import ${IMPORT_NAME}; print('Imported ${IMPORT_NAME} from ' + ${IMPORT_NAME}.__file__)" | |
| command -v "${ENTRYPOINT_NAME}" |