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adding easyconfigs: IQ-TREE-2.3.6-gompi-2023a.eb
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pavelToman committed Nov 19, 2024
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51 changes: 51 additions & 0 deletions easybuild/easyconfigs/i/IQ-TREE/IQ-TREE-2.3.6-gompi-2023a.eb
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easyblock = 'CMakeMake'

name = 'IQ-TREE'
version = '2.3.6'

# HTTPS is not working
homepage = 'http://www.iqtree.org/'
description = """Efficient phylogenomic software by maximum likelihood"""

toolchain = {'name': 'gompi', 'version': '2023a'}
# Including 'usempi' will take precedence and override IQTREE_FLAGS and produces only 'iqtree-mpi' binary

source_urls = ['https://github.com/iqtree/iqtree2/archive/']
sources = [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
patches = [
'IQ-TREE-2.3.5_use_EB_LSD2.patch',
]
checksums = [
{'IQ-TREE-2.3.6.tar.gz': '2d389ea74e19773496363cd68270b341ac7cc47c60e7f32859682403b34744cf'},
{'IQ-TREE-2.3.5_use_EB_LSD2.patch': 'b4578b01f06ae52b94b332622c0f6630497cd29cb61010f58f7c5018c2c32a5f'},
]

builddependencies = [
('CMake', '3.26.3'),
('Eigen', '3.4.0'),
]
dependencies = [
('zlib', '1.2.13'),
('Boost', '1.82.0'),
('LSD2', '2.4.1'),
]

local_conf_opts = ' -DUSE_LSD2=ON '
configopts = [
'-DIQTREE_FLAGS=omp' + local_conf_opts,
'-DIQTREE_FLAGS=mpi -DCMAKE_C_COMPILER="$MPICC" -DCMAKE_CXX_COMPILER="$MPICXX"' + local_conf_opts,
]

sanity_check_paths = {
'files': ['bin/iqtree2', 'bin/iqtree2-mpi'],
'dirs': [],
}

sanity_check_commands = [
"iqtree2 --help",
"mkdir -p $TMPDIR/{test-omp,test-mpi}",
"cd $TMPDIR/test-omp && cp -a %(installdir)s/example.phy . && iqtree2 -s example.phy -redo",
"cd $TMPDIR/test-mpi && cp -a %(installdir)s/example.phy . && mpirun -np 1 iqtree2-mpi -s example.phy -redo",
]

moduleclass = 'bio'

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