Skip to content

Commit

Permalink
adding easyconfigs: SAMtools-1.13-GCC-12.3.0.eb
Browse files Browse the repository at this point in the history
  • Loading branch information
pavelToman committed Jan 10, 2024
1 parent 542297f commit 5195fce
Showing 1 changed file with 25 additions and 0 deletions.
25 changes: 25 additions & 0 deletions easybuild/easyconfigs/s/SAMtools/SAMtools-1.13-GCC-12.3.0.eb
Original file line number Diff line number Diff line change
@@ -0,0 +1,25 @@
name = 'SAMtools'
version = '1.13'

homepage = 'https://www.htslib.org/'
description = """SAM Tools provide various utilities for manipulating alignments in the SAM format,
including sorting, merging, indexing and generating alignments in a per-position format."""

toolchain = {'name': 'GCC', 'version': '12.3.0'}
toolchainopts = {'pic': True}

source_urls = ['https://github.com/%(namelower)s/%(namelower)s/releases/download/%(version)s']
sources = [SOURCELOWER_TAR_BZ2]
checksums = ['616ca2e051cc8009a1e9c01cfd8c7caf8b70916ddff66f3b76914079465f8c60']

# The htslib component of SAMtools >= 1.4 uses zlib, bzip2 and lzma compression.
# The latter is currently provided by XZ.
dependencies = [
('ncurses', '6.4'),
('zlib', '1.2.13'),
('bzip2', '1.0.8'),
('XZ', '5.4.2'),
('cURL', '8.0.1'),
]

moduleclass = 'bio'

0 comments on commit 5195fce

Please sign in to comment.