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BUG: Allow value labels to be read with iterator (#16926)
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All value labels to be read before the iterator has been used
Fix issue where categorical data was incorrectly reformatted when
write_index was False

closes #16923
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bashtage authored and gfyoung committed Jul 14, 2017
1 parent a587d56 commit 6858d0f
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Showing 3 changed files with 36 additions and 19 deletions.
1 change: 1 addition & 0 deletions doc/source/whatsnew/v0.21.0.txt
Original file line number Diff line number Diff line change
Expand Up @@ -162,6 +162,7 @@ I/O

- Bug in :func:`read_csv` in which non integer values for the header argument generated an unhelpful / unrelated error message (:issue:`16338`)

- Bug in :func:`read_stata` where value labels could not be read when using an iterator (:issue:`16923`)

Plotting
^^^^^^^^
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36 changes: 20 additions & 16 deletions pandas/io/stata.py
Original file line number Diff line number Diff line change
Expand Up @@ -997,6 +997,7 @@ def __init__(self, path_or_buf, convert_dates=True,
self.path_or_buf = BytesIO(contents)

self._read_header()
self._setup_dtype()

def __enter__(self):
""" enter context manager """
Expand Down Expand Up @@ -1299,6 +1300,23 @@ def _read_old_header(self, first_char):
# necessary data to continue parsing
self.data_location = self.path_or_buf.tell()

def _setup_dtype(self):
"""Map between numpy and state dtypes"""
if self._dtype is not None:
return self._dtype

dtype = [] # Convert struct data types to numpy data type
for i, typ in enumerate(self.typlist):
if typ in self.NUMPY_TYPE_MAP:
dtype.append(('s' + str(i), self.byteorder +
self.NUMPY_TYPE_MAP[typ]))
else:
dtype.append(('s' + str(i), 'S' + str(typ)))
dtype = np.dtype(dtype)
self._dtype = dtype

return self._dtype

def _calcsize(self, fmt):
return (type(fmt) is int and fmt or
struct.calcsize(self.byteorder + fmt))
Expand Down Expand Up @@ -1472,22 +1490,10 @@ def read(self, nrows=None, convert_dates=None,
if nrows is None:
nrows = self.nobs

if (self.format_version >= 117) and (self._dtype is None):
if (self.format_version >= 117) and (not self._value_labels_read):
self._can_read_value_labels = True
self._read_strls()

# Setup the dtype.
if self._dtype is None:
dtype = [] # Convert struct data types to numpy data type
for i, typ in enumerate(self.typlist):
if typ in self.NUMPY_TYPE_MAP:
dtype.append(('s' + str(i), self.byteorder +
self.NUMPY_TYPE_MAP[typ]))
else:
dtype.append(('s' + str(i), 'S' + str(typ)))
dtype = np.dtype(dtype)
self._dtype = dtype

# Read data
dtype = self._dtype
max_read_len = (self.nobs - self._lines_read) * dtype.itemsize
Expand Down Expand Up @@ -1958,7 +1964,6 @@ def _prepare_categoricals(self, data):
return data

get_base_missing_value = StataMissingValue.get_base_missing_value
index = data.index
data_formatted = []
for col, col_is_cat in zip(data, is_cat):
if col_is_cat:
Expand All @@ -1981,8 +1986,7 @@ def _prepare_categoricals(self, data):

# Replace missing values with Stata missing value for type
values[values == -1] = get_base_missing_value(dtype)
data_formatted.append((col, values, index))

data_formatted.append((col, values))
else:
data_formatted.append((col, data[col]))
return DataFrame.from_items(data_formatted)
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18 changes: 15 additions & 3 deletions pandas/tests/io/test_stata.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,18 +9,18 @@
from datetime import datetime
from distutils.version import LooseVersion

import pytest
import numpy as np
import pandas as pd
import pandas.util.testing as tm
import pytest
from pandas import compat
from pandas._libs.tslib import NaT
from pandas.compat import iterkeys
from pandas.core.dtypes.common import is_categorical_dtype
from pandas.core.frame import DataFrame, Series
from pandas.io.parsers import read_csv
from pandas.io.stata import (read_stata, StataReader, InvalidColumnName,
PossiblePrecisionLoss, StataMissingValue)
from pandas._libs.tslib import NaT
from pandas.core.dtypes.common import is_categorical_dtype


class TestStata(object):
Expand Down Expand Up @@ -1297,3 +1297,15 @@ def test_pickle_path_localpath(self):
reader = lambda x: read_stata(x).set_index('index')
result = tm.round_trip_localpath(df.to_stata, reader)
tm.assert_frame_equal(df, result)

@pytest.mark.parametrize('write_index', [True, False])
def test_value_labels_iterator(self, write_index):
# GH 16923
d = {'A': ['B', 'E', 'C', 'A', 'E']}
df = pd.DataFrame(data=d)
df['A'] = df['A'].astype('category')
with tm.ensure_clean() as path:
df.to_stata(path, write_index=write_index)
dta_iter = pd.read_stata(path, iterator=True)
value_labels = dta_iter.value_labels()
assert value_labels == {'A': {0: 'A', 1: 'B', 2: 'C', 3: 'E'}}

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