Next attempt for tests #84
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| name: Run Tests | |
| on: [push] | |
| jobs: | |
| Run-PostgreSQL-Tests: | |
| strategy: | |
| matrix: | |
| include: | |
| - search_path: public,gdm_vocabs | |
| data_model: gdm | |
| - search_path: public,ohdsi_vocabs | |
| data_model: gdm | |
| - search_path: wide,ohdsi_vocabs | |
| data_model: gdm_wide | |
| runs-on: ubuntu-latest | |
| environment: Test Secrets | |
| env: | |
| SEQUELIZER_SEARCH_PATH: ${{ matrix.search_path }} | |
| CONCEPTQL_DATA_MODEL: ${{ matrix.data_model }} | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - | |
| name: Log into DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Run Tests | |
| run: docker-compose run conceptql | |
| Run-Spark-Tests: | |
| strategy: | |
| matrix: | |
| spark_version: [3.5.0, 3.3.2] | |
| include: | |
| - vocabs: ohdsi | |
| data_model: gdm | |
| - vocabs: ohdsi_wide | |
| data_model: gdm_wide | |
| runs-on: ubuntu-22.04 | |
| env: | |
| SPARK_VERSION: ${{ matrix.spark_version }} | |
| CONCEPTQL_DATA_MODEL: ${{ matrix.data_model }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: 3.2 | |
| bundler-cache: true | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/spark | |
| key: spark-${{ env.SPARK_VERSION }} | |
| id: cache-spark | |
| - name: Download Spark | |
| if: steps.cache-spark.outputs.cache-hit != 'true' | |
| run: | | |
| wget -q https://archive.apache.org/dist/spark/spark-$SPARK_VERSION/spark-$SPARK_VERSION-bin-hadoop3.tgz | |
| tar xzf spark-$SPARK_VERSION-bin-hadoop3.tgz | |
| mv spark-$SPARK_VERSION-bin-hadoop3 ~/spark | |
| - uses: actions/cache@v3 | |
| with: | |
| path: /tmp/synpuf_test_data | |
| key: synpuf-test-data | |
| id: cache-synpuf-test-data | |
| - name: Download Data | |
| if: steps.cache-synpuf-test-data.outputs.cache-hit != 'true' | |
| run: | | |
| cd /tmp | |
| curl -sSL "https://www.dropbox.com/scl/fi/hha5zjm9d5ezkk8bfvtnc/synpuf_test_data.tgz?rlkey=lythw2s6342609ave66cam2ms&dl=1" > synpuf_test_data.tgz | |
| tar xzf synpuf_test_data.tgz | |
| - run: ~/spark/sbin/start-thriftserver.sh --driver-memory 5G && sleep 20 | |
| - run: bundle exec ruby test/all.rb | |
| env: | |
| CONCEPTQL_PARQUET_TEST_DIR: /tmp/synpuf_test_data/${{ matrix.vocabs }} | |
| SEQUELIZER_URL: hexspace://localhost:10000/default |