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lib/deploy: Port config merge logic to new code style
This is a de-scoping of work I did in preparation for rpm-ostree [live updates](coreos/rpm-ostree#652). Originally I was going to expose this as a public API. However, I decided to do things differently, but the cleanup here for new code style and fd-relative is nice to have anyways. We rework things to use `OstreeDeployment*`, which the caller is expected to already have, rather than `GFile*`s pointing to the config directories. Closes: #741 Approved by: jlebon
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