QuPath_PAS_Intestine

• Developed for: Céline
• Team: Espeli
• Date: August 2022
• Software: QuPath

Images description

2D images of intestine sections taken with a slide scanner

Plugin description

• Perform color deconvolution
• Detect the tissue contour and holes with a pixel classifier
• Detect cells in the tissue with Stardist

Dependencies

• QuPath pixel classifier named intestine.json
• Stardist QuPath extension + dsb2018_heavy_augment.pb model

Version history

Version 1 released on August 5, 2022.