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    • ggridges

      Public
      Ridgeline plots in ggplot2
      R
      GNU General Public License v2.0
      31411422Updated Dec 11, 2024Dec 11, 2024
    • ungeviz

      Public
      Tools for visualizing uncertainty with ggplot2
      R
      915940Updated Dec 3, 2024Dec 3, 2024
    • HTML
      3200Updated Sep 11, 2024Sep 11, 2024
    • Materials for a dataviz shortcourse
      HTML
      MIT License
      0500Updated Aug 11, 2024Aug 11, 2024
    • cowplot

      Public
      cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2
      R
      84709343Updated Jun 28, 2024Jun 28, 2024
    • SDS375

      Public
      SDS 375 Data Visualization in R
      HTML
      8628710Updated Apr 24, 2024Apr 24, 2024
    • cinful

      Public
      A fully automated pipeline to identify microcins along with their associated immunity proteins and export machinery
      Pep8
      GNU General Public License v3.0
      1630Updated Apr 11, 2024Apr 11, 2024
    • DSC385

      Public
      HTML
      MIT License
      101611Updated Apr 2, 2024Apr 2, 2024
    • gridtext

      Public
      Improved text rendering support for grid graphics in R
      R
      Other
      1996174Updated Feb 28, 2024Feb 28, 2024
    • ggtext

      Public
      Improved text rendering support for ggplot2
      R
      GNU General Public License v2.0
      37657412Updated Dec 19, 2023Dec 19, 2023
    • sicegar

      Public
      R package for the analysis of single cell virology growth curves
      R
      4931Updated Jan 31, 2023Jan 31, 2023
    • A repository for the analysis involved in "Evidence for widespread class II microcins in Enterobacterales genomes"
      Jupyter Notebook
      GNU General Public License v3.0
      1300Updated Oct 19, 2022Oct 19, 2022
    • An implementation of the Grammar of Graphics in R
      R
      Other
      2k200Updated Jul 7, 2022Jul 7, 2022
    • Opfi

      Public
      A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
      Python
      MIT License
      52130Updated Oct 26, 2021Oct 26, 2021
    • Metagenomic search for novel CRISPR-transposons
      C++
      51110Updated Sep 30, 2021Sep 30, 2021
    • 0000Updated Aug 17, 2021Aug 17, 2021
    • Practical ggplot2
      R
      Other
      67410Updated Feb 1, 2021Feb 1, 2021
    • Source for wilkelab.org website
      HTML
      3700Updated Sep 5, 2020Sep 5, 2020
    • glhlth590

      Public
      CSS
      0000Updated Apr 26, 2020Apr 26, 2020
    • Shell
      2000Updated Sep 11, 2018Sep 11, 2018
    • Shell
      0300Updated Sep 6, 2018Sep 6, 2018
    • Data and code for Smith et al., Avian Influenza Virus PB1 Gene in H3N2 Viruses Evolved in Humans To Reduce Interferon Inhibition by Skewing Codon Usage toward Interferon-Altered tRNA Pools, mBio 2018
      Python
      1100Updated Jun 28, 2018Jun 28, 2018
    • R
      0100Updated Feb 26, 2017Feb 26, 2017
    • Code and data for Brown et al., Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions
      Jupyter Notebook
      2000Updated Aug 30, 2016Aug 30, 2016
    • Data and code for McWhite et al., Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin, Virus Evolution (2016)
      HyPhy
      2200Updated Aug 24, 2016Aug 24, 2016
    • Python
      91400Updated Mar 25, 2016Mar 25, 2016
    • Code and data for Jackson et al., Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins, Protein Science, in press.
      Python
      1100Updated Jan 2, 2016Jan 2, 2016
    • Python
      1000Updated Oct 8, 2015Oct 8, 2015
    • HyPhy
      2510Updated Jun 22, 2015Jun 22, 2015
    • Code and data for Echave et al., Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites, Phys. Biol. 12:025002, 2015.
      Python
      1100Updated May 22, 2015May 22, 2015