Repositories list

• vcztools

  Public
  Partial reimplementation of bcftools for VCF Zarr

  Python

  •

  Apache License 2.0

  •3•4•18•1•Updated Nov 29, 2024Nov 29, 2024

• bio2zarr

  Public
  Convert bioinformatics file formats to Zarr

  Python

  •

  Apache License 2.0

  •7•28•24•6•Updated Nov 28, 2024Nov 28, 2024

• vcf-zarr-publication

  Public
  Manuscript and associated scripts for vcf-zarr publication

  Jupyter Notebook

  •8•2•10•0•Updated Nov 28, 2024Nov 28, 2024

• sgkit

  Public
  Scalable genetics toolkit

  gwasgeneticspydata+ 3popgenstatistical-geneticsstatgen

  Python

  •

  Apache License 2.0

  •32•236•216•8•Updated Nov 25, 2024Nov 25, 2024

• sgkit-benchmarks-asv

  Public
  JavaScript

  •1•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• vcf-zarr-spec

  Public
  VCF Zarr Specification

  Apache License 2.0

  •2•12•23•0•Updated Jul 29, 2024Jul 29, 2024

• hypothesis-vcf

  Public
  Hypothesis strategy for generating VCF

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Jul 18, 2024Jul 18, 2024

• sgkit-publication

  Public
  Sgkit publication repository

  TeX

  •5•5•19•0•Updated Mar 6, 2024Mar 6, 2024

• sgkit-publication-backup

  Public
  Backup of sgkit publication repository, original manubot version

  HTML

  •

  Other

  •5•0•0•0•Updated Feb 27, 2023Feb 27, 2023

• sgkit-bgen

  Public archive
  NOW ARCHIVED! BGEN IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.

  Python

  •

  Apache License 2.0

  •3•0•12•0•Updated Oct 6, 2020Oct 6, 2020

• sgkit-plink

  Public archive
  NOW ARCHIVED! PLINK IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.

  Python

  •

  Apache License 2.0

  •4•0•8•0•Updated Sep 17, 2020Sep 17, 2020

• sgkit-vcf

  Public archive
  NOW ARCHIVED! VCF IO implementations for sgkit. With https://github.com/pystatgen/sgkit/issues/65, now maintained and developed in the sgkit repo.

  Python

  •

  Apache License 2.0

  •2•0•1•0•Updated Sep 15, 2020Sep 15, 2020

• .github

  Public
  Default community health files

  0•0•0•0•Updated Aug 10, 2020Aug 10, 2020

• sgkit-requirements

  Public
  Repo for collecting requirements.

  Jupyter Notebook

  •

  MIT License

  •1•6•8•1•Updated Jul 22, 2020Jul 22, 2020