Repositories list

• seurat

  Public
  R toolkit for single cell genomics

  single-cell-genomicssingle-cell-rna-seqhuman-cell-atlas+ 1cran

  R

  •

  Other

  •924•2.3k•368•23•Updated Jan 14, 2025Jan 14, 2025

• satijalab.r-universe.dev

  Public
  0•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• sctransform

  Public
  R package for modeling single cell UMI expression data using regularized negative binomial regression

  R

  •

  GNU General Public License v3.0

  •33•216•45•0•Updated Dec 19, 2024Dec 19, 2024

• Mixscale

  Public
  R

  •0•8•9•0•Updated Dec 18, 2024Dec 18, 2024

• seurat-object

  Public
  R

  •

  Other

  •27•24•43•8•Updated Dec 12, 2024Dec 12, 2024

• seurat-docker

  Public
  Docker images of Seurat

  dockersingle-cellsingle-cell-genomics+ 2single-cell-analysishuman-cell-atlas

  Dockerfile

  •7•9•2•0•Updated Dec 9, 2024Dec 9, 2024

• seurat-wrappers

  Public
  Community-provided extensions to Seurat

  communitysingle-cell-genomicssingle-cell-analysis

  R

  •

  GNU General Public License v3.0

  •131•318•86•14•Updated Nov 22, 2024Nov 22, 2024

• azimuth_website

  Public
  HTML

  •1•1•0•1•Updated Nov 6, 2024Nov 6, 2024

• azimuth-references

  Public
  R

  •10•20•10•2•Updated Nov 5, 2024Nov 5, 2024

• azimuth

  Public
  A Shiny web app for mapping datasets using Seurat v4

  single-cell-genomicssingle-cell-rna-seqshiny-app

  HTML

  •

  GNU General Public License v3.0

  •34•119•72•3•Updated Nov 5, 2024Nov 5, 2024

• PASTA

  Public
  R

  •

  Other

  •6•17•6•1•Updated Aug 26, 2024Aug 26, 2024

• seurat-data

  Public
  Dataset distribution for Seurat

  datasetssingle-cellsingle-cell-genomics

  R

  •

  GNU General Public License v3.0

  •46•134•34•2•Updated Nov 4, 2023Nov 4, 2023

• scChromHMM

  Public
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.

  single-cellhistone-modificationschromatin-state

  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •5•26•3•0•Updated Sep 9, 2021Sep 9, 2021

• azimuth-meta-analysis

  Public
  R

  •1•2•0•0•Updated Jun 14, 2021Jun 14, 2021

• AzimuthDashboard

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 16, 2021Feb 16, 2021

• lung-ccf

  Public
  Central repo to deposit code for lung CCF project

  Jupyter Notebook

  •1•2•0•0•Updated Feb 12, 2020Feb 12, 2020

• controls

  Public
  Jupyter Notebook

  •2•0•0•0•Updated Nov 20, 2019Nov 20, 2019

• data

  Public
  2•0•0•0•Updated Nov 20, 2019Nov 20, 2019

• Integration2019

  Public
  R

  •9•16•3•0•Updated Jun 5, 2019Jun 5, 2019

• gdown.pl

  Public
  Google Drive direct download of big files

  Perl

  •

  GNU General Public License v3.0

  •195•0•0•0•Updated Feb 3, 2019Feb 3, 2019

• hca-jamboree-how-many-cells

  Public
  MIT License

  •8•0•0•0•Updated Apr 10, 2018Apr 10, 2018