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    6 repositories

    • Hyb-Seq_protocol

      Public
      A protocol for designing probes for targeted sequence capture from the input of genomic and transcriptomic data, and methods for analyzing the resulting sequence data.
      Python
      •5•4•0•0•Updated Mar 8, 2016Mar 8, 2016

    • utility-scripts

      Public
      Utility scripts written for the Cronn and Liston labs
      Python
      •1•0•0•0•Updated Oct 14, 2015Oct 14, 2015

    • Workshops

      Public
      0•0•0•0•Updated Aug 12, 2015Aug 12, 2015

    • POLiMAPS

      Public
      Perl scripts for analyzing polyploid DNA sequence data
      Perl
      •3•0•0•0•Updated Mar 31, 2015Mar 31, 2015

    • fastq_collapse

      Public
      Discards exact fastq sequence duplicates, preserving the highest average quality score. It also makes a file containing all the duplicated reads.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Feb 18, 2014Feb 18, 2014

    • polymorphic_read_counter_bwaPileup

      Public
      Calculates the proportion of reads at a DNA sequence position that differ from the majority.
      Perl
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Feb 14, 2014Feb 14, 2014