Repositories list

• projects

  Public
  std datatypes for data analysis projects

  Scala

  •

  GNU Affero General Public License v3.0

  •0•0•3•2•Updated Oct 23, 2017Oct 23, 2017

• db.rna16s18s

  Public
  a database with 16S and 18S sequences

  Scala

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jul 2, 2017Jul 2, 2017

• db.peces16s

  Public
  A one-off 16S db for fish (who knew?)

  Scala

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jun 20, 2017Jun 20, 2017

• report.g8

  Public
  TeX

  •0•0•0•0•Updated Jan 13, 2017Jan 13, 2017

• db.rna18s

  Public
  Scala

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Apr 27, 2016Apr 27, 2016

• bundles

  Public
  std AWS-tested bioinformatics bundles

  Scala

  •

  GNU Affero General Public License v3.0

  •0•0•2•1•Updated Mar 2, 2016Mar 2, 2016

• pandoc-revealjs-slides

  Public
  A template for creating slides with pandoc markdown and reveal.js

  CSS

  •0•3•0•0•Updated May 21, 2015May 21, 2015

• cmdlineapp.g8

  Public
  a giter8 template for a scala command-line tool, using conscript and scallop

  Scala

  •0•0•0•0•Updated Mar 27, 2014Mar 27, 2014

• .pandoc

  Public
  a base .pandoc folder, including custom templates

  TeX

  •0•2•0•0•Updated Mar 13, 2014Mar 13, 2014

• report.preprocessing

  Public
  Scala

  •0•1•0•0•Updated Jun 20, 2013Jun 20, 2013

• md2pdf

  Public
  a wrapper around pandoc for converting markdown to pdf

  Scala

  •0•1•1•0•Updated May 20, 2013May 20, 2013

• mummer.install

  Public
  Shell

  •0•1•0•0•Updated May 11, 2013May 11, 2013

• ngs-for-clinicians

  Public
  work on Mehis Pold idea: an open source tool that facilitates interpretation of a whole-genome NGS genetic finding for clinicians

  0•4•0•0•Updated May 6, 2013May 6, 2013

• prinseq.install

  Public archive
  Shell

  •3•0•0•0•Updated Apr 30, 2013Apr 30, 2013

• oases.install

  Public archive
  Shell

  •0•0•0•0•Updated Apr 30, 2013Apr 30, 2013

• github-archive

  Public
  a copy of some stuff from https://github.com/codepill/script-utilities

  Python

  •0•0•0•0•Updated Mar 22, 2013Mar 22, 2013

• gtt

  Public archive
  fork of git time tracker -> http://gitorious.org/gtt/gtt

  Shell

  •14•3•0•0•Updated Mar 18, 2013Mar 18, 2013

• express.install

  Public archive
  Shell

  •0•0•0•0•Updated Feb 11, 2013Feb 11, 2013

• bamtools.install

  Public archive
  Shell

  •0•0•0•0•Updated Feb 11, 2013Feb 11, 2013

• tophat.install

  Public archive
  Shell

  •0•0•0•0•Updated Feb 10, 2013Feb 10, 2013

• samtools.install

  Public archive
  Shell

  •0•0•0•0•Updated Feb 10, 2013Feb 10, 2013

• boost.install

  Public archive
  Shell

  •0•0•0•0•Updated Feb 10, 2013Feb 10, 2013

• bowtie.install

  Public archive
  Shell

  •0•0•0•0•Updated Feb 10, 2013Feb 10, 2013

• bowtie2.install

  Public archive
  Shell

  •0•0•0•0•Updated Feb 10, 2013Feb 10, 2013

• bwa.install

  Public archive
  Shell

  •0•0•0•0•Updated Jan 7, 2013Jan 7, 2013

• md2slides

  Public
  generate slides from md with our custom pandoc templates

  Scala

  •0•2•1•0•Updated Dec 26, 2012Dec 26, 2012

• amos.install

  Public archive
  install AMOS

  Shell

  •0•0•0•0•Updated Nov 22, 2012Nov 22, 2012

• tool.install.g8

  Public
  a giter8 template for creating shell app installers

  Scala

  •0•0•0•0•Updated Sep 13, 2012Sep 13, 2012

• vanilla.g8

  Public
  simple project template

  Scala

  •0•1•0•0•Updated Aug 9, 2012Aug 9, 2012

• conscript.g8

  Public
  Create conscript programs

  Scala

  •3•1•0•0•Updated Jul 21, 2012Jul 21, 2012