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    • DigiPico

      Public archive
      Python
      •
      Other
      •3•0•0•0•Updated Dec 10, 2021Dec 10, 2021

    • chronic_neuropixels_2

      Public
      MATLAB
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 23, 2020Oct 23, 2020

    • chronic_neuropixels

      Public archive
      A manuscript on the protocol on chronic recording from Neuropixels probes
      MATLAB
      •
      Apache License 2.0
      •5•0•0•0•Updated Oct 23, 2020Oct 23, 2020

    • mvpa_changepoint_fmri

      Public archive
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Oct 19, 2020Oct 19, 2020

    • MaLab_spec_subs

      Public archive
      Final repository for GS specific residue analysis for ATP5G1 project
      Python
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Oct 16, 2020Oct 16, 2020

    • ActinEnrichment

      Public archive
      ImageJ plug-in to quantify the enrichment of a certain protein on actin filaments
      Java
      •
      MIT License
      •1•0•0•0•Updated Oct 15, 2020Oct 15, 2020

    • ridge

      Public archive
      Efficient python code for running ridge regression with cross validation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •26•1•0•0•Updated Oct 15, 2020Oct 15, 2020

    • eFOV_microendoscopes_sim

      Public archive
      Simulations code for Antonini et al
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 15, 2020Oct 15, 2020

    • metapop

      Public archive
      Accompanying code for Shapiro et al. 2019
      R
      •
      MIT License
      •1•0•0•0•Updated Oct 14, 2020Oct 14, 2020

    • PercevalHR-fluorescence-intensity

      Public archive
      To track cell and measure PercevalHR fluorescence intensity
      MATLAB
      •
      MIT License
      •1•0•0•0•Updated Oct 12, 2020Oct 12, 2020

    • topologicalConstraintsSpecialization

      Public archive
      code to generate data and figures for "Topological Constraints In The Origin of Adaptive Specialization"
      Mathematica
      •
      MIT License
      •1•0•0•0•Updated Oct 9, 2020Oct 9, 2020

    • ventroposterior-hypothalamus-scrna-seq

      Public archive
      Code to reproduce analysis and figures for scRNA-seq analysis of the ventroposterior hypothalamus in Mickelsen et. al 2020
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Oct 9, 2020Oct 9, 2020

    • Sapphire

      Public archive
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 8, 2020Oct 8, 2020

    • PPiSeq

      Public archive
      code for second PPiSeq paper
      HTML
      •
      MIT License
      •2•0•0•0•Updated Oct 7, 2020Oct 7, 2020

    • tracing_quantification_and_analysis

      Public archive
      FIJI macros and python scripts to quantify and analyse RV and AAV tracings
      Python
      •
      GNU General Public License v3.0
      •5•1•0•0•Updated Oct 6, 2020Oct 6, 2020

    • DeepFRET-Model

      Public archive
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Oct 6, 2020Oct 6, 2020

    • drug-synergy

      Public archive
      Code for "The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies"
      Python
      •
      Apache License 2.0
      •2•1•0•0•Updated Oct 6, 2020Oct 6, 2020

    • phenazines

      Public archive
      Python
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Oct 6, 2020Oct 6, 2020

    • RegSeq

      Public archive
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Oct 5, 2020Oct 5, 2020

    • undead-walking

      Public archive
      Supporting code for Pop et al., 2020
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 1, 2020Oct 1, 2020

    • CBLAST

      Public archive
      Tools for clustering neurons using synaptic connectivity
      Jupyter Notebook
      •
      Other
      •3•0•0•0•Updated Oct 1, 2020Oct 1, 2020

    • hot-knife

      Public archive
      Java
      •
      GNU General Public License v2.0
      •7•0•0•0•Updated Oct 1, 2020Oct 1, 2020

    • n5

      Public archive
      Not HDF5
      Java
      •
      BSD 2-Clause "Simplified" License
      •22•0•0•0•Updated Oct 1, 2020Oct 1, 2020

    • covid19_asymptomatic_trans

      Public archive
      R
      •
      MIT License
      •4•0•0•0•Updated Sep 30, 2020Sep 30, 2020

    • KSCIRC-Gait-Addin

      Public archive
      Microsoft Excel Gait analysis Add-in for videos digitized in Maxtraq
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 30, 2020Sep 30, 2020

    • Pocratsky_et_al_2020

      Public archive
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 30, 2020Sep 30, 2020

    • m3ha_published

      Public archive
      Associated code for Lu et al 2020 eLife ("Nonlinearities between inhibition and T-type calcium channel activity bidirectionally regulate thalamic oscillations")
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 28, 2020Sep 28, 2020

    • hpo_ova_eggL_screen

      Public archive
      Topology-driven analysis of protein-protein interaction networks detects functional genetic modules regulating reproductive capacity
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Sep 28, 2020Sep 28, 2020

    • CavanaghLam2020CodeRepository

      Public archive
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Sep 25, 2020Sep 25, 2020

    • biteOscope

      Public archive
      scripts for running biteOscope and processing data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Sep 25, 2020Sep 25, 2020