Repositories list

• ngsutilsj

  Public
  Java companion programs for NGSUtils

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •1•5•2•0•Updated Dec 3, 2024Dec 3, 2024

• gvcf_to_vcf

  Public
  Converting gVCF to VCF files

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• mappability

  Public
  Python

  •0•2•0•0•Updated Oct 15, 2024Oct 15, 2024

• cgpipe

  Public
  cgpipe - minimum viable HPC pipeline

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•0•Updated Aug 6, 2024Aug 6, 2024

• cgpipe-pipelines

  Public
  PIpelines for use with CGPipe

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

• compgen-io-site

  Public
  Website source

  HTML

  •0•0•0•0•Updated Mar 8, 2024Mar 8, 2024

• sbs

  Public
  Simple Batch Scheduler - a single user job scheduler

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•5•0•0•Updated Jul 3, 2023Jul 3, 2023

• compgen-cmdline

  Public
  Library for setting up and configuring command line programs

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•1•Updated Jun 16, 2023Jun 16, 2023

• cgpipe-docs

  Public
  HTML

  •0•0•0•3•Updated Apr 12, 2023Apr 12, 2023

• tabl-docs

  Public
  documentation for the tabl project

  HTML

  •0•0•0•3•Updated Apr 12, 2023Apr 12, 2023

• cghla

  Public
  Tools for finding MHC genotypes for WGS/WES/RNAseq data

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Mar 11, 2023Mar 11, 2023

• compgen-common

  Public
  Support utility classes for Java

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 22, 2021Jan 22, 2021

• compgen-io-docs

  Public
  HTML

  •0•0•0•0•Updated Apr 19, 2020Apr 19, 2020

• cmdline-tutorial

  Public
  Tutorials on working with data from the command line

  HTML

  •0•0•0•0•Updated Apr 19, 2020Apr 19, 2020

• mhsig

  Public
  Microhomology scanner

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 16, 2019Nov 16, 2019

• cgpipemon

  Public
  Server app for monitoring pipeline job progress

  Go

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 31, 2018Jan 31, 2018

• txtutils

  Public
  Text processing utilities

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated May 31, 2017May 31, 2017

• sjq-java

  Public
  Simple Job Queue

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Apr 6, 2017Apr 6, 2017

• genelist

  Public
  Web application for managing gene lists

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 7, 2017Feb 7, 2017

• cgseq

  Public
  Cancer Genome Sequencing Utils

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 2, 2016Jun 2, 2016

• compgen-io.github.io

  Public
  Website for compgen.io

  HTML

  •0•1•0•0•Updated Apr 22, 2016Apr 22, 2016

• cgsplice

  Public
  Splicing tools

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Mar 4, 2016Mar 4, 2016

• basespace-download

  Public
  Command line downloader for files from Illumina's Basespace

  Go

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 16, 2015Dec 16, 2015

• cgdocker

  Public
  Dockerfiles

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 29, 2015Oct 29, 2015

• sqz

  Public
  SQZ - file format for archiving raw genome sequencing data

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 29, 2015Oct 29, 2015