Repositories list

• upptime

  Public
  CNS Services Uptime Monitor

  Markdown

  •

  MIT License

  •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• hra-kg-supporting-information

  Public
  A repository to hold Supplemental Information for the HRA Knowledge Graph paper

  Jupyter Notebook

  •0•0•1•0•Updated Dec 19, 2024Dec 19, 2024

• scimaps

  Public
  SciMaps website

  TypeScript

  •0•2•10•0•Updated Dec 19, 2024Dec 19, 2024

• hra-queries

  Public
  A repository for one-off API queries and similar coding experiments with HRA data

  Jupyter Notebook

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• hra-3d-cell-generation-api

  Public
  API to generate 3D Cells inside Anatomical Structures

  human-reference-atlas

  C++

  •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• hra-glb-preprocessor

  Public
  Make meshes manifold and filling holes. Generate OFF file for a single mesh from GLB

  Python

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• hra-node-dist-vis

  Public
  HRA Node Distance Visualization Web Component

  human-reference-atlas

  JavaScript

  •

  MIT License

  •0•2•0•0•Updated Dec 16, 2024Dec 16, 2024

• hra-cell-type-populations-supporting-information

  Public
  Supporting information page for the HRApop paper

  human-reference-atlassupporting-information

  HTML

  •1•0•7•0•Updated Dec 13, 2024Dec 13, 2024

• hra-amap

  Public
  HRA-AMAP: Bidirectional Projections Between Human Atlas Systems for Data and Code Interoperability

  human-reference-atlas

  Jupyter Notebook

  •

  MIT License

  •0•0•4•0•Updated Dec 13, 2024Dec 13, 2024

• hra-ftu-explorer-supporting-information

  Public
  Supporting information page for the FTU Explorer paper (in progress)

  human-reference-atlassupporting-information

  Jupyter Notebook

  •0•0•2•0•Updated Dec 11, 2024Dec 11, 2024

• hra-ftu-vccf-supporting-information

  Public
  Supporting information page for the "Function Tissue Units in the Human Reference Atlas" paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •1•1•0•0•Updated Dec 9, 2024Dec 9, 2024

• hra-mouse-registrations

  Public
  Blender files and models for 5x5 mouse registrations

  human-reference-atlas

  1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• hra-scrollytelling

  Public
  Learn about the HRA through scrollytelling!

  human-reference-atlas

  HTML

  •

  MIT License

  •0•2•0•0•Updated Dec 6, 2024Dec 6, 2024

• hra-organ-gallery-in-vr

  Public
  HRA Organ Gallery in VR

  Jupyter Notebook

  •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

• hra-construction-usage-supporting-information

  Public
  Supporting information page for the "Human BioMolecular Atlas Program (HuBMAP): 3D Reference Atlas Construction and Usage" paper

  human-reference-atlassupporting-information

  Jupyter Notebook

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• macroscope-kiosk

  Public
  The Macroscope Kiosk is an application to access macroscopes from the Places & Spaces: Mapping Science exhibit

  TypeScript

  •

  MIT License

  •1•0•5•4•Updated Oct 28, 2024Oct 28, 2024

• hra-organ-gallery-supporting-information

  Public
  Supporting information for page for the "Enriching and Using 3D Reference Objects in the Human Reference Atlas in the HRA user Interfaces and the HRA Organ Gallery in Virtual Reality" paper

  human-reference-atlassupporting-information

  0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

• a2agc-dataset

  Public
  Advanced Analytics for IU’s Addictions Grand Challenge (A2AGC)

  TypeScript

  •

  MIT License

  •1•0•0•12•Updated Sep 21, 2024Sep 21, 2024

• hra-lymphatics-3d-do

  Public
  A repo to hold data and code for testing the HRA 3D Digital Object for the axillary lymph nodes

  0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• hra-scrolly-3d-assets

  Public
  A repository to hold work for scrollytelling with 3D models

  0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

• hra-sennet-hoa-kaggle-2024

  Public
  Code for "Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys"

  machine-learningcomputer-visiondeep-learning+ 3kaggle-competitionpublication-codevasculature

  Jupyter Notebook

  •

  MIT License

  •1•1•1•0•Updated Aug 27, 2024Aug 27, 2024

• hra-juelich

  Public
  MIT License

  •0•0•3•0•Updated Aug 22, 2024Aug 22, 2024

• hra-ct-heterogeneity

  Public
  A repository for summer work on cell type heterogeneity

  Jupyter Notebook

  •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• hra-corridor-generation-gpu

  Public
  GPU-powered API to generate corridors (GLB) for RUI locations

  human-reference-atlas

  C++

  •

  Apache License 2.0

  •0•1•0•0•Updated Aug 13, 2024Aug 13, 2024

• hra-cell-embeddings

  Public
  A repo to capture cell embedding visualizations

  Jupyter Notebook

  •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

• hra-pop-helios

  Public
  Simple pipeline to create KNN networks from single-cell gene expression (counts data).

  Python

  •

  MIT License

  •1•0•0•0•Updated Aug 7, 2024Aug 7, 2024

• hra-vccf-cell-distance-visualizations

  Public
  HRA VCCF cell distance visualizations extended to other organs, based on work on skin data.

  human-reference-atlas

  HTML

  •

  MIT License

  •1•0•0•0•Updated Aug 4, 2024Aug 4, 2024

• hra-4dn-3d-prototyping

  Public
  A repo to hold code for playing with 4DN data

  Jupyter Notebook

  •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

• hra-name-disambiguation

  Public
  A repo to hold work on name disambiguation in HRAlit

  Jupyter Notebook

  •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

• hra-glb-download

  Public
  Download HRA 3D Reference Organ GLB files

  human-reference-atlas

  Python

  •0•0•0•0•Updated Jul 23, 2024Jul 23, 2024