Cancer Genomics Prato (CGP) Lab

All

9 repositories

MIMESIS
Public
A package to identify type/subtype of tumor samples and estimate tumor content using minimal DNA-methylation signatures
R
•
MIT License
•1•1•0•0•Updated Aug 31, 2023Aug 31, 2023
PAMES
Public
Tool to estimate purity of tumor samples exploiting DNA Methylation data
tumor dna-methylation purity admixture epigenomics
R
•
GNU General Public License v3.0
•8•10•2•0•Updated Nov 30, 2022Nov 30, 2022
Rockermeth
Public
A tool for discovering Differentially Methylated Regions
methylation differential-methylation
R
•
MIT License
•2•4•1•0•Updated Mar 7, 2022Mar 7, 2022
RadAR
Public
A tool to perform comprehensive analysis of high-dimensional radiomic datasets
data-analysis imaging radiomics radiomics-analysis imaging-genomics
R
•
MIT License
•5•14•6•1•Updated Jan 28, 2022Jan 28, 2022
Rocker-meth
Public
Rockermeth is a tool for discovering Differentially Methylated Regions (DMRs)
MIT License
•0•0•0•0•Updated Dec 3, 2021Dec 3, 2021
PAMESdata
Public
Precomputed informative CpG sites and CpG islands to be used with PAMES package
r cancer tcga dna-methylation purity
R
•
GNU General Public License v3.0
•2•0•0•0•Updated Jan 28, 2021Jan 28, 2021
covidapp
Public
A web application implementing models to predict ICU admission for COVID-19 patients based on clinical, laboratory and imaging parameters
glmnet predictive-modeling covid-19
R
•
MIT License
•0•0•0•0•Updated Jan 16, 2021Jan 16, 2021
ddSeeker
Public
A tool for processing Bio-Rad ddSEQ single cell RNA-seq data
tool scrna-seq
Python
•
GNU General Public License v3.0
•3•4•0•0•Updated Mar 25, 2020Mar 25, 2020
ddSeeker_example_dataset
Public
0•0•1•0•Updated Dec 27, 2018Dec 27, 2018