Repositories list

• nf_genomics_pipelines

  Public
  This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data

  coveragegenomicsbam+ 6nextflow-pipelinescram-filesanalysisgenomics-datanextflow-workflow-managementnf-genomics-pipelines

  Nextflow

  •

  Apache License 2.0

  •1•2•0•0•Updated Sep 12, 2021Sep 12, 2021

• fasta_parser

  Public
  Small package used to parse a file in the Fasta format

  dnafasta-formatfasta-parser

  C++

  •

  Apache License 2.0

  •0•2•0•0•Updated Mar 30, 2021Mar 30, 2021

• CPP

  Public
  This repo contains CPP scripts to perform certain tasks

  cmakegenomicsvcf+ 2cmakelistswig

  C++

  •0•2•0•0•Updated Mar 28, 2021Mar 28, 2021

• R_scripts

  Public
  Collection of simple R scripts to analyse genomic data

  R

  •

  Apache License 2.0

  •0•1•0•0•Updated Jan 29, 2021Jan 29, 2021

• course_material

  Public
  This directory contains material that I've used in different courses

  tutorialgenomicsvariant-calling+ 3bcftoolsfreebayesnextflow-pipelines

  Apache License 2.0

  •0•1•0•0•Updated Jan 13, 2021Jan 13, 2021

• htslib_howto

  Public
  Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts

  cbam-filessam+ 6genomic-data-analysisvcf-filesfastq-filessam-fileshtslibcram-files

  C

  •

  Apache License 2.0

  •1•10•0•0•Updated Dec 11, 2020Dec 11, 2020

• Variation_studies

  Public
  This repo contains code and notebooks relevant for the analysis of genomic variation data

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•0•Updated Apr 17, 2019Apr 17, 2019