Repositories list

• DonorCheck

  Public
  Utility for validating donor typing entries to DonorNet

  donationorganhealthcare+ 1transplant

  Java

  •0•2•8•6•Updated Dec 7, 2024Dec 7, 2024

• kd-match

  Public
  kd-tree matching for nearest neighbor selection

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

• GenScorePipeline

  Public
  Genetic Score Pipeline, Merge Extract Pipeline

  Java

  •0•1•7•0•Updated Apr 18, 2024Apr 18, 2024

• MatchSamples

  Public
  Java

  •

  GNU General Public License v2.0

  •0•0•3•0•Updated Apr 16, 2024Apr 16, 2024

• long-read-plot

  Public
  Plots for long read sequencing data

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 29, 2024Mar 29, 2024

• Genvisis-Docs

  Public
  Documentation for Genvisis

  0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

• Genvisis-Website

  Public
  Text and images for the Genvisis webpage

  JavaScript

  •0•0•0•0•Updated Jan 3, 2024Jan 3, 2024

• warp

  Public
  WDL Analysis Research Pipelines

  WDL

  •

  BSD 3-Clause "New" or "Revised" License

  •98•0•0•0•Updated Nov 30, 2023Nov 30, 2023

• htsjdk

  Public
  A Java API for high-throughput sequencing data (HTS) formats.

  Java

  •245•0•0•0•Updated Oct 5, 2023Oct 5, 2023

• bakeoff

  Public
  Shell

  •0•2•0•0•Updated Sep 8, 2023Sep 8, 2023

• cue

  Public
  Deep learning framework for SV calling and genotyping

  Jupyter Notebook

  •

  MIT License

  •20•0•0•0•Updated Aug 29, 2023Aug 29, 2023

• RUFUS

  Public
  RUFUS k-mer based genomic variant detection

  C++

  •13•0•0•0•Updated Aug 22, 2023Aug 22, 2023

• pankratzlab.github.io

  Public
  0•0•0•0•Updated Jun 16, 2023Jun 16, 2023

• NGS-TL

  Public
  Estimate telomere length (TL) from whole genome sequencing (WGS)

  Shell

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Jun 1, 2023Jun 1, 2023

• NGS-PCA

  Public
  Methods for running PCA on NGS data

  Java

  •

  GNU General Public License v3.0

  •1•3•0•0•Updated May 19, 2023May 19, 2023

• igv-xvfb

  Public
  IGV with Xvfb

  Dockerfile

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 16, 2023Feb 16, 2023

• IGV-VM

  Public
  Build IGV instance that can take screenshots without a GUI or X11

  Dockerfile

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 10, 2023Feb 10, 2023

• SuperNovo

  Public
  DeNovo Mutation Identification and Validation

  de-novo-mutationngs-analysis

  Java

  •

  Apache License 2.0

  •1•0•0•5•Updated Dec 2, 2022Dec 2, 2022

• jFlow

  Public
  Java

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Nov 14, 2022Nov 14, 2022

• IGV-snapshot-automator

  Public
  Script to automatically create and run IGV snapshot batchscripts

  Python

  •

  GNU General Public License v3.0

  •50•0•0•0•Updated Oct 26, 2022Oct 26, 2022

• ExomeDepthExample

  Public
  Example for running exomeDepth

  R

  •

  MIT License

  •0•0•0•0•Updated Oct 25, 2022Oct 25, 2022

• mosdepth-docker

  Public
  WDL

  •

  MIT License

  •1•0•0•0•Updated Aug 22, 2022Aug 22, 2022

• NativeJFileChooser

  Public
  Native file chooser for Swing using JavaFX if available

  Java

  •

  BSD 2-Clause "Simplified" License

  •3•0•0•0•Updated Oct 1, 2019Oct 1, 2019