Repositories list

• fiji-exercises-collection

  Public
  This is a collection of exercises for the open-source Fiji software.

  JavaScript

  •1•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• fiji-workshop

  Public
  Materials supporting the ImageJ/Fiji workshop at Harvard Medical School.

  imagejfijiteaching+ 1image-analysis

  Creative Commons Attribution 4.0 International

  •2•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• Kidney-Tissue-Characterization-Using-Normalized-Raman-Imaging-NoRI-and-Segment-Anything

  Public
  1•0•0•0•Updated Jan 21, 2025Jan 21, 2025

• qupath-workshop

  Public
  Materials supporting the QuPath workshop at Harvard Medical School.

  teachingimage-analysisintroduction+ 1qupath

  Creative Commons Attribution 4.0 International

  •1•3•0•0•Updated Jan 16, 2025Jan 16, 2025

• fiji-macro-workshop

  Public
  Materials supporting the Fiji Macro workshop at Harvard Medical School.

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

• SAM-using-Python-for-Microscopy-Data

  Public
  Jupyter Notebook

  •

  MIT License

  •3•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• Bioimage-Analysis-on-O2

  Public
  Documentation page

  HTML

  •0•2•0•0•Updated Oct 19, 2024Oct 19, 2024

• BIA-QC

  Public
  Quality control for bioimage analysis

  Python

  •

  MIT License

  •1•1•0•0•Updated Oct 19, 2024Oct 19, 2024

• workshop-template

  Public template
  Sphinx template to host workshop materials with versioning support.

  templatesphinxversioning

  Creative Commons Attribution 4.0 International

  •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• stroma-spatial-analysis

  Public
  An image analysis pipeline for quantifying the spatial distribution of cell markers in stroma-rich tumors

  image-analysiswhole-slide-imagingqupath+ 1fluorescence-microscopy

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• .github

  Public
  About

  0•2•0•0•Updated Jun 15, 2024Jun 15, 2024