Repositories list

• generic-filehandle2

  Public
  modernization of the original generic-filehandle, no Buffer polyfill needed

  TypeScript

  •0•0•0•0•Updated Feb 9, 2025Feb 9, 2025

• jbrowse-components

  Public
  Source code for JBrowse 2, a modern React-based genome browser

  visualizationbioinformaticsgenomics+ 1jbrowse

  TypeScript

  •

  Apache License 2.0

  •64•222•321•19•Updated Feb 9, 2025Feb 9, 2025

• Apollo3

  Public
  JBrowse 2 plugin for editing annotations on an Apollo server

  TypeScript

  •

  Apache License 2.0

  •4•10•56•3•Updated Feb 8, 2025Feb 8, 2025

• jbrowse

  Public
  JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

  bioinformaticsgenomicsbiology+ 3genome-annotationgenome-browserprotein-annotation

  JavaScript

  •

  Other

  •198•465•158•12•Updated Feb 7, 2025Feb 7, 2025

• jbrowse-react-linear-genome-view-cra5-demo

  Public
  TypeScript

  •0•0•0•1•Updated Feb 7, 2025Feb 7, 2025

• jbrowse-plugin-template

  Public template
  Template to quickly start a new JBrowse 2 plugin

  TypeScript

  •

  Apache License 2.0

  •0•5•15•2•Updated Feb 4, 2025Feb 4, 2025

• react-msaview

  Public
  A multiple sequence alignment viewer

  TypeScript

  •

  MIT License

  •1•19•25•0•Updated Feb 3, 2025Feb 3, 2025

• Apollo

  Public
  Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

  grailsgwtgroovy+ 4apollojbrowsegenome-annotation-editorjbrowse-plugin

  Groovy

  •

  Other

  •85•131•236•1•Updated Jan 31, 2025Jan 31, 2025

• jbrowse-react-app-farm-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-app-nextjs-demo

  Public
  TypeScript

  •0•1•1•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-circular-genome-view-nextjs-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-linear-genome-view-vite-demo

  Public
  TypeScript

  •1•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-linear-genome-view-rsbuild-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-linear-genome-view-farm-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-linear-genome-view-nextjs-demo

  Public
  TypeScript

  •1•1•1•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-circular-genome-view-cra5-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-app-rsbuild-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-app-vite-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• jbrowse-react-app-cra5-demo

  Public
  TypeScript

  •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• vcf-js

  Public
  High performance Variant Call Format (VCF) parser in pure JavaScript

  TypeScript

  •

  MIT License

  •5•24•1•0•Updated Jan 29, 2025Jan 29, 2025

• abortable-promise-cache

  Public
  add AbortController support to a cache of async requests

  TypeScript

  •

  MIT License

  •2•6•1•5•Updated Jan 26, 2025Jan 26, 2025

• bam-js

  Public
  Parse BAM and BAM index files in javascript for node and the browser

  TypeScript

  •

  MIT License

  •9•22•9•1•Updated Jan 23, 2025Jan 23, 2025

• twobit-js

  Public
  Read .2bit files with pure JS. Works in node or webpack.

  TypeScript

  •

  MIT License

  •2•4•0•0•Updated Jan 22, 2025Jan 22, 2025

• bed-js

  Public
  A parser for the BED format including autoSql support

  TypeScript

  •1•5•1•1•Updated Jan 22, 2025Jan 22, 2025

• cram-js

  Public
  Read CRAM v3 and v2 in node or in the browser

  genomics

  TypeScript

  •

  MIT License

  •9•18•8•1•Updated Jan 22, 2025Jan 22, 2025

• nclist-js

  Public
  Read JBrowse v1 nested containment list feature stores from modern JS

  TypeScript

  •

  MIT License

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• indexedfasta-js

  Public
  Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi

  TypeScript

  •

  MIT License

  •4•12•0•1•Updated Jan 22, 2025Jan 22, 2025

• ixixx-js

  Public
  TypeScript

  •

  MIT License

  •2•3•1•0•Updated Jan 22, 2025Jan 22, 2025

• ucsc-hub-js

  Public
  read and write UCSC track and assembly hub files in node or the browser

  TypeScript

  •

  MIT License

  •2•5•5•1•Updated Jan 22, 2025Jan 22, 2025

• bbi-js

  Public
  Parser for bigwig and bigbed files

  TypeScript

  •

  MIT License

  •6•8•8•0•Updated Jan 22, 2025Jan 22, 2025