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    604 repositories

    • gimap

      Public
      Genetic Interaction MAPping for dual target CRISPR screens
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•6•2•Updated Feb 18, 2025Feb 18, 2025

    • wiki

      Public
      SciWiki: Collective KnowledgeBase for Scientific Data and Use
      data-sciencebioinformaticswikicomputingsciwikifhdaslcommunitydocumentationopen-science
      HTML
      •
      Other
      •45•38•68•4•Updated Feb 17, 2025Feb 17, 2025

    • ocdo

      Public
      Home of the OCDO public website
      SCSS
      •0•0•0•2•Updated Feb 16, 2025Feb 16, 2025

    • gig-map

      Public
      Build a map of genes present across a set of microbial genomes
      Python
      •4•13•0•0•Updated Feb 16, 2025Feb 16, 2025

    • itn-dashboard

      Public
      ITN Dashboard for data generated from metricminer
      dasl
      R
      •0•0•6•0•Updated Feb 16, 2025Feb 16, 2025

    • easybuild-life-sciences

      Public
      Howto and implementation documentation
      easybuildlifesciencescientific-softwareeasyconfig
      C++
      •6•22•5•0•Updated Feb 14, 2025Feb 14, 2025

    • target-data-viz

      Public
      Shiny app for visualizing TARGET pediatric AML data
      HTML
      •2•3•8•0•Updated Feb 13, 2025Feb 13, 2025

    • gig-map-viewer

      Public
      Interactive viewer of pangenome results generated by gig-map
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • trm-calculator

      Public
      TRM R Shiny app repo
      R
      •
      MIT License
      •0•1•0•0•Updated Feb 13, 2025Feb 13, 2025

    • rnaseq-de-viewer-marimo

      Public
      View for RNAseq-based Differential Expression Analysis Results using Marimo
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • ichorCurate

      Public
      Python
      •
      Other
      •0•2•0•0•Updated Feb 12, 2025Feb 12, 2025

    • marimo-publication

      Public
      Example of publishing serverless interactive visualizations using marimo
      Python
      •
      MIT License
      •1•8•0•0•Updated Feb 12, 2025Feb 12, 2025

    • pca-salvage-therapy-predictimands

      Public
      Code supporting "Predictimands for Salvage Therapy in Biochemically Recurrent Prostate Cancer Using Joint Longitudinal and Failure Time Models"
      R
      •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • wdl-unit-tests

      Public
      Collection of simple WDL's for use in unit testing of WDL-centric software such as PROOF
      WDL
      •
      MIT License
      •0•0•29•10•Updated Feb 12, 2025Feb 12, 2025

    • integrationsites

      Public
      The Integration Sites web application is a bioinformatics tool to detect the integration sites of HIV into the human genome
      JavaScript
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • quality

      Public
      The program QUALITY is a variant of the Minimum χ2 (MC) method for limiting dilution assays. It modifies the MC method to allow the user to specify the probabilities of the false negative and false positive PCR.
      C++
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • marimo-viewer-cirro

      Public template
      Marimo-based visualization of data stored in Cirro
      Python
      •
      MIT License
      •2•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • cut-and-run-viewer

      Public
      Visualization of CUT&RUN results
      Python
      •
      MIT License
      •2•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • differential-expression-viewer

      Public
      Visualization of differential expression results
      Python
      •
      MIT License
      •2•2•0•0•Updated Feb 10, 2025Feb 10, 2025

    • workflows-cirro

      Public
      Collection of workflow configurations for execution via Cirro
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • GDSCNsoilsites

      Public
      Homepage for BioDIGS Project. Learn about the project and download data.
      datametagenomicsstudent-researchbiodigs
      R
      •
      MIT License
      •0•1•10•0•Updated Feb 6, 2025Feb 6, 2025

    • prometheus-slurm-exporter

      Public
      Prometheus exporter for performance metrics from Slurm.
      Go
      •
      GNU General Public License v3.0
      •153•0•1•0•Updated Feb 6, 2025Feb 6, 2025

    • Ishida-etal-2023

      Public
      Repo for the computational code used in Ishida et al. 2023, submitted.
      R
      •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • DIHIVA

      Public
      Defect and Intact HIV genome Assembler (DIHIVA)
      Perl
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • early-onset-cancer-modeling

      Public
      Code supporting "Trends in Young-Onset Cancer Incidence: A Modeling Perspective"
      R
      •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

    • motuz

      Public
      Motuz - A web based infrastructure for large scale data movements between on-premise and cloud
      JavaScript
      •
      MIT License
      •12•105•74•35•Updated Feb 5, 2025Feb 5, 2025

    • VISCtemplates

      Public
      Tools for writing reproducible reports at VISC
      visc
      R
      •
      Other
      •2•6•36•4•Updated Feb 4, 2025Feb 4, 2025

    • pgmap

      Public
      Python
      •1•0•5•1•Updated Jan 29, 2025Jan 29, 2025

    • tfcb_2025

      Public
      Course website for MCB 536 Tools for Computational Biology Fall 2025
      Jupyter Notebook
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • EBcb

      Public
      EasyBuild container build - A docker container for building software with EasyBuild
      Shell
      •1•7•0•0•Updated Jan 23, 2025Jan 23, 2025