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    27 repositories

    • BCG_methylation_project

      Public
      R
      •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • SegDecon

      Public
      AI-powered nuclei segmentation enhances histological image process and Spatial Transcriptomics deconvolution
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Feb 18, 2025Feb 18, 2025

    • HIV-integration

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • LongCOVID

      Public
      R scripts
      R
      •0•0•0•0•Updated Jan 19, 2025Jan 19, 2025

    • scImmuAging

      Public
      R
      •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

    • 2000HIV_CMV

      Public
      Code for the 2000HIV CMV manuscript
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • 2000HIV_CMV-Methylation

      Public
      R
      •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

    • iMED

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • 2000HIV_HIV_controller

      Public
      R
      •0•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • EWAS_Urate

      Public
      R
      •0•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • Lyme_cQTL

      Public
      Code for "A comprehensive genetic map of cytokine responses in Lyme borreliosis"
      R
      •0•1•0•0•Updated Apr 8, 2024Apr 8, 2024

    • pml

      Public
      Code to process PML samples
      R
      •1•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • CellDemux

      Public
      Python
      •
      MIT License
      •0•3•1•0•Updated Jan 12, 2024Jan 12, 2024

    • 300bcg_sceQTL

      Public
      R
      •1•1•0•0•Updated Jan 2, 2024Jan 2, 2024

    • postcovid19

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 9, 2023Nov 9, 2023

    • Covid_Lockdown_2000HIV

      Public
      DNA methylation analysis of covid infection, vaccination and lockdown effects in 2000HIV
      R
      •0•0•0•0•Updated Sep 6, 2023Sep 6, 2023

    • LymeProspect_GWAS

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 21, 2023Mar 21, 2023

    • COMBI

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 30, 2022Nov 30, 2022

    • TIGENS

      Public
      R
      •0•1•0•0•Updated Sep 14, 2022Sep 14, 2022

    • thyroid-cancer

      Public
      All R code used in the analysis of single-cell sequencing of thyroid cancer patients, multinodal goiter patients and healthy individuals
      R
      •
      MIT License
      •1•1•0•0•Updated Aug 8, 2022Aug 8, 2022

    • INDIA

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 14, 2022Jul 14, 2022

    • Sepsis

      Public
      A single-cell RNA-sequencing study of PBMC samples from 16 sepsis patients and 6 controls to help unterstand the heterogeneity in immune responses in sepsis.
      R
      •0•1•0•0•Updated May 25, 2022May 25, 2022

    • MHH50_COVID19_code

      Public
      Original code used to process and visualize scRNA-seq, scATAC-seq, and genotype data for MHH50 COVID-19 project.
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 17, 2022May 17, 2022

    • trained_immunity

      Public
      R codes of trained immunity scRNA-seq projects
      R
      •
      MIT License
      •0•1•0•0•Updated Feb 8, 2022Feb 8, 2022

    • Postcovid-targeted-proteomics

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 9, 2021Dec 9, 2021

    • ulcerative_colitis_scRNAseq

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 30, 2021Nov 30, 2021

    • PIAMA_allergic_disease

      Public
      0•1•0•0•Updated Nov 8, 2020Nov 8, 2020