Repositories list

• domainOntology

  Public
  Java

  •1•0•8•1•Updated Sep 23, 2022Sep 23, 2022

• ie-viz

  Public
  The Information Extraction and Visualization Toolkit Centralized Architecture prototype is designed for generating and visualizing clinical notes annotations for VA patient narratives and connecting with the relevant ontologies.

  Java

  •1•1•3•0•Updated Aug 24, 2021Aug 24, 2021

• Blulab-Utah.github.io

  Public
  Blulab Homepage

  HTML

  •0•0•0•0•Updated Dec 19, 2019Dec 19, 2019

• MoonstoneDemo

  Public
  Demonstration of Moonstone, with Powerpoint tutorial on creating new grammar rules

  1•0•1•0•Updated Oct 3, 2019Oct 3, 2019

• pyConTextPipeline

  Public
  Pipeline tool for pyConTextNLP developed for VA/VINCI use that adds a CLI, misspellings finder, database I/O, batching, multiprocessing, several sentence splitters, and eHOST output

  Python

  •1•1•0•0•Updated Jun 6, 2019Jun 6, 2019

• KA_API

  Public
  Java

  •0•0•0•0•Updated May 10, 2019May 10, 2019

• LexiconMapping

  Public
  A data extraction component by incorporating an API that could extract family-relationship information related to all the HL7 and SNOMED standard codes across an entire domain.

  Java

  •0•0•0•0•Updated May 1, 2019May 1, 2019

• VAReadmissionMoonstone

  Public
  Moonstone NLP system applied to VA project to study the analysis of social risk factors applied to hospital readmission

  Java

  •3•4•0•0•Updated Apr 18, 2019Apr 18, 2019

• nlptools

  Public
  This repository consists of Clinical NLP tools collection built at BluLab

  Java

  •0•0•0•0•Updated Feb 10, 2019Feb 10, 2019

• NobleMentions

  Public
  Java

  •0•0•0•0•Updated Nov 16, 2018Nov 16, 2018

• FamilyHistoryFeatureEncoder

  Public
  Family History Feature Encoder retrieves the best features needed to demonstrate the feasibility of extracting individualized patient cancer risk assessments for breast, ovarian, and colon cancer and leveraging risk factors based on family history information from clinical texts

  Java

  •1•1•0•0•Updated Jun 25, 2018Jun 25, 2018

• resource_ontologies

  Public
  Web Ontology Language

  •2•1•4•0•Updated Jun 14, 2017Jun 14, 2017

• knowledgeAuthor

  Public
  Java

  •0•0•0•0•Updated Jun 5, 2017Jun 5, 2017

• MoonstoneServlet2

  Public
  0•0•0•0•Updated Apr 9, 2017Apr 9, 2017

• AMI-RO1

  Public
  AMI R01 HL 130828 Information Extraction from EMRs to Predict Readmission following AMI

  0•0•0•0•Updated Dec 9, 2016Dec 9, 2016

• GitTest

  Public
  0•0•0•0•Updated Aug 30, 2016Aug 30, 2016

• pyConText-carotid-stenosis-detection

  Public
  The purpose of this tool is to extract mentions of carotid stenosis, categorize the mentions into 3 classes (no stenosis, insignificant stenosis, or significant stenosis) and, then classify the whole document according to the most significant mention level encoded within the document.

  Python

  •

  Apache License 2.0

  •2•2•0•0•Updated Aug 17, 2016Aug 17, 2016

• SKOSEditor

  Public
  Java

  •2•7•1•0•Updated Jan 29, 2016Jan 29, 2016

• ConText

  Public
  Java

  •

  Apache License 2.0

  •7•9•1•1•Updated Jun 25, 2015Jun 25, 2015

• VIP-regex

  Public
  0•0•0•0•Updated May 11, 2015May 11, 2015