Code

Removes Apache Commons Math#241

Code

Merged

Craigacp merged 51 commits intooracle:mainoracle/tribuo:mainfrom Craigacp:commons-math-removalCraigacp/tribuo:commons-math-removalCopy head branch name to clipboardJul 28, 2022

+3,142-787

Commits

Commits on May 11, 2022

• Adding Cholesky factorization & Multivariate normal for sampling. Migrates ClusteringDataGenerator and GaussianClusterDataSource over to use it.

  Craigacp

  committed
  b3531d3

• Roughing out LU factorization.

  Craigacp

  committed
  954c820

• Implementing LU factorization and solver methods.

  Craigacp

  committed
  7b2257c

• Adding a test helper for comparing top feature maps and tidied up the dense la package.

  Craigacp

  committed
  ae7689b

• Removing commons math from Regression/SLM. Due to some additional refactoring it's now a lot faster.

  Craigacp

  committed
  5026ab7

• Stubbing out eigen decomposition.

  Craigacp

  committed
  56dce9a

Commits on May 13, 2022

• Initial eigen decomposition, still buggy.

  Craigacp

  committed
  323e83c

Commits on May 14, 2022

• Fixing the eigen decomposition.

  Craigacp

  committed
  60a13e5

• Commons math begone!

  Craigacp

  committed
  43e24e2

Commits on May 16, 2022

• Adding CholeskyFactorization.solve implementations, improving CholeskyFactorization tests, and other small bits of tidying.

  Craigacp

  committed
  accae2e

• Promoting DenseMatrix.getColumn to Matrix, implementing it on DenseSparseMatrix. Adding solve and inverse methods to EigenDecomposition along with tests.

  Craigacp

  committed
  af83956

Commits on May 23, 2022

• Renaming org.tribuo.math.rng to org.tribuo.math.distributions

  Craigacp

  committed
  b6d359e

• Improving the docs for the la factorization methods.

  Craigacp

  committed
  8ba663b

• Removing commons math from the third party licenses.

  Craigacp

  committed
  d2be6a2

• Cleanups.

  Craigacp

  committed
  1a36117

Commits on Jun 13, 2022

• Switching to Arrays.fill to zero part of a matrix.

  Craigacp

  committed
  799e7ee

• Removing a dependent load.

  Craigacp

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  68f1eb1

Commits on Jul 23, 2022

• Adding an interface for factorizations, migrating the factorizations over to record style accessors.

  Craigacp

  committed
  c04eda5

Commits on Jul 25, 2022

• initial commit of GammaTest

  pogren

  committed
  556134f

• added testReductionBiFunction and testMeanVariance to DenseVectorTest

  pogren

  committed
  3cd120f

• added some addition tests/assertions for cholesky and lu factorization.

  pogren

  committed
  af33f87

• fixes issue with test matrix for cholensky factorization.

  pogren

  committed
  63ee5dd

Commits on Jul 27, 2022

• adding some python code to help generate a unit test for

  Show description for d30a604
  pogren

  committed
  d30a604

• added printMatrixPythonFriendly to DenseMatrix

  pogren

  committed
  b3ea277

• added unit testing for eigendecomposition, setColumn, and selectColumns

  pogren

  committed
  72b87c9

• cleaning up, standardizing, filling out factorization/decomp tests

  pogren

  committed
  6d6dc3f

• added test for createIdentity and createDiagonal

  pogren

  committed
  ed6aa12

• added simple test for DenseSparseMatrix.getColumn

  pogren

  committed
  9eb0033

Commits on Jul 28, 2022

• ClusteringMetrics.adjustedMI produces same values as sklearn

  Show description for b7c0abb
  pogren

  committed
  b7c0abb

• add delta to unit test for mi

  pogren

  committed
  f8b2966

• comments demonstrating generating test values in numpy/scypy/sklearn

  pogren

  committed
  9595871

• added comment showing how to generate test

  pogren

  committed
  10818c1

• initial commit of GammaTest

  pogren

  committed
  742e304

• added testReductionBiFunction and testMeanVariance to DenseVectorTest

  pogren

  committed
  afc81a6

• added some addition tests/assertions for cholesky and lu factorization.

  pogren

  committed
  6a6e464

• fixes issue with test matrix for cholensky factorization.

  pogren

  committed
  25c7146

• adding some python code to help generate a unit test for

  Show description for d1c6f9c
  pogren

  committed
  d1c6f9c

• added printMatrixPythonFriendly to DenseMatrix

  pogren

  committed
  5f77d74

• added unit testing for eigendecomposition, setColumn, and selectColumns

  pogren

  committed
  4c76b61

• cleaning up, standardizing, filling out factorization/decomp tests

  pogren

  committed
  5a1bd8a

• added test for createIdentity and createDiagonal

  pogren

  committed
  89addb3

• added simple test for DenseSparseMatrix.getColumn

  pogren

  committed
  c93cdd3

• ClusteringMetrics.adjustedMI produces same values as sklearn

  Show description for b0e472b
  pogren

  committed
  b0e472b

• add delta to unit test for mi

  pogren

  committed
  70e51f9

• comments demonstrating generating test values in numpy/scypy/sklearn

  pogren

  committed
  d91004d

• added comment showing how to generate test

  pogren

  committed
  c228de1

• fixes compile errors

  pogren

  committed
  6fabb6f

• resolves merge conflict

  pogren

  committed
  4d2aa61

• reverted adjustedMI to using 'min' approach for calculating denominator

  Show description for 7108a8b
  pogren

  committed
  7108a8b

• Merge pull request #2 from pogren/commons-math-removal-pvo-review

  Show description for 560384f
  Craigacp

  authored
  560384f

• Fixing licensing information.

  Craigacp

  committed
  717ff81