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Regenerated nml files with latest nml libraries #77

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26 changes: 16 additions & 10 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -9,27 +9,33 @@ c302 is a framework for generating network models in NeuroML 2 based on *C. eleg

![c302 structure](https://raw.githubusercontent.com/openworm/CElegansNeuroML/master/CElegans/pythonScripts/c302/images/c302.png)

It uses information on the synaptic connectivity of the network (from [here](https://github.com/openworm/c302/blob/master/c302/data/CElegansNeuronTables.xls)) and uses [libNeuroML](https://github.com/NeuralEnsemble/libNeuroML) to generate a network in valid NeuroML, which can be run in [jNeuroML](https://github.com/NeuroML/jNeuroML) or [pyNeuroML](https://github.com/NeuroML/pyNeuroML).
It uses information on the synaptic connectivity of the network (from [here](https://github.com/openworm/c302/blob/master/c302/data)) and uses [libNeuroML](https://github.com/NeuralEnsemble/libNeuroML) to generate a network in valid NeuroML, which can be run in [jNeuroML](https://github.com/NeuroML/jNeuroML) or [pyNeuroML](https://github.com/NeuroML/pyNeuroML).

**The c302 paper has recently been published!**
**The c302 paper is out!**

*c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans* Padraig Gleeson, David Lung, Radu Grosu, Ramin Hasani, Stephen D. Larson, [Phil. Trans. R. Soc. B 2018 373 20170379](http://rstb.royalsocietypublishing.org/content/373/1758/20170379); DOI: 10.1098/rstb.2017.0379.


### To install & test

The full set of dependencies for c302 can be installed with the following (see also the [Travis-CI script](https://github.com/openworm/c302/blob/master/.travis.yml)):
The full set of dependencies for c302 can be installed with the following (see also the [ci.yml](https://github.com/openworm/c302/blob/master/.github/workflows/ci.yml) and [non_omv.yml](https://github.com/openworm/c302/blob/master/.github/workflows/non_omv.yml) workflow files):

git clone https://github.com/openworm/c302.git
cd c302
pip install .
owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json'
```console
git clone https://github.com/openworm/c302.git
cd c302
pip install .

# The following can only be run on Mac and Linux. Note: c302 can be run without ownmeta fully installed
owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json'
```

This will install c302 as well as [pyNeuroML](https://github.com/NeuroML/pyNeuroML) and [owmeta](https://github.com/openworm/owmeta).

To run the test.sh script, the Neuron simulator is also required, and should be installed as described [here](https://www.neuron.yale.edu/neuron/download).
For Windows users a virtual environment must be generated with Python 3.10 as any newer versions do not currently support owmeta.

To run the test.sh script, the Neuron simulator is also required, and should be installed as described [here](https://www.neuron.yale.edu/neuron/download) (On Mac and Linux it can be installed with `pip install neuron`).

For Linux users, additional dependencies (OpenJDK 19 and Graphviz) are required to run the Usage Examples:
For Linux users, additional dependencies (OpenJDK 19 and Graphviz) are required to run the usage examples:

sudo apt-get install openjdk-19-jdk graphviz

Expand Down Expand Up @@ -81,7 +87,7 @@ Screenshots of a simulation with pyNeuroML of c302_B_Pharyngeal are shown below

#### 1b) Run standard examples with Neuron

The models can also be run using the Neuron simulator. This should be installed as outlined [here](https://www.neuron.yale.edu/neuron/download).
The models can also be run using the Neuron simulator. This should be installed as outlined [here](https://www.neuron.yale.edu/neuron/download). Note: running c302 with Neuron is not currently supported on Windows.

cd examples
pynml LEMS_c302_A_IClamp.xml -neuron # Generate the Neuron files (Python/hoc/mod)
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2 changes: 1 addition & 1 deletion cells/ADAL_D.cell.nml
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@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="ADAL">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="ADAL">
<cell id="ADAL">
<notes>Cell model created by c302 with custom electrical parameters</notes>
<morphology id="morphology_ADAL">
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2 changes: 1 addition & 1 deletion cells/AIBL_D.cell.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AIBL">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AIBL">
<cell id="AIBL">
<notes>Cell model created by c302 with custom electrical parameters</notes>
<morphology id="morphology_AIBL">
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2 changes: 1 addition & 1 deletion cells/DB5_D.cell.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="DB5">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="DB5">
<cell id="DB5">
<notes>Cell model created by c302 with custom electrical parameters</notes>
<morphology id="morphology_DB5">
Expand Down
2 changes: 1 addition & 1 deletion cells/I1L_D.cell.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="I1L">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="I1L">
<cell id="I1L">
<notes>Cell model created by c302 with custom electrical parameters</notes>
<morphology id="morphology_I1L">
Expand Down
2 changes: 1 addition & 1 deletion cells/I3_D.cell.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="I3">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="I3">
<cell id="I3">
<notes>Cell model created by c302 with custom electrical parameters</notes>
<morphology id="morphology_I3">
Expand Down
2 changes: 1 addition & 1 deletion cells/PVCR_D.cell.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="PVCR">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="PVCR">
<cell id="PVCR">
<notes>Cell model created by c302 with custom electrical parameters</notes>
<morphology id="morphology_PVCR">
Expand Down
2 changes: 1 addition & 1 deletion examples/c302_A_Full.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Full">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Full">
<notes>

Parameters and setting used to generate this network:
Expand Down
2 changes: 1 addition & 1 deletion examples/c302_A_IClamp.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_IClamp">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_IClamp">
<notes>

Parameters and setting used to generate this network:
Expand Down
2 changes: 1 addition & 1 deletion examples/c302_A_Muscles.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Muscles">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Muscles">
<notes>

Parameters and setting used to generate this network:
Expand Down
2 changes: 1 addition & 1 deletion examples/c302_A_Oscillator.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Oscillator">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Oscillator">
<notes>

Parameters and setting used to generate this network:
Expand Down
2 changes: 1 addition & 1 deletion examples/c302_A_Pharyngeal.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Pharyngeal">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Pharyngeal">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_A_Social.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Social">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Social">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_A_Syns.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Syns">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Syns">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_B_Full.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Full">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Full">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_B_IClamp.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_IClamp">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_IClamp">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_B_Muscles.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Muscles">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Muscles">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_B_Oscillator.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Oscillator">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Oscillator">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_B_Pharyngeal.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Pharyngeal">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Pharyngeal">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_B_Social.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Social">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Social">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_B_Syns.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Syns">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Syns">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_C0_Full.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_C0_Full">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_C0_Full">
<notes>

Parameters and setting used to generate this network:
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2 changes: 1 addition & 1 deletion examples/c302_C0_IClamp.net.nml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_C0_IClamp">
<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_C0_IClamp">
<notes>

Parameters and setting used to generate this network:
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