Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Manuscript #69

Merged
merged 57 commits into from
Nov 28, 2022
Merged

Manuscript #69

merged 57 commits into from
Nov 28, 2022

Conversation

wincowgerDEV
Copy link
Collaborator

Hoping all coauthors can review the manuscript by September 19th. Let me know if you need more time.

@wincowgerDEV
Copy link
Collaborator Author

I would like to add two other coauthors to the manuscript from Let's Do It World (@KristiinaKerge and @krishaamer). They were a huge part of the initial push for WADE AI which inspired this project and they are interested in helping us review the manuscript and help us make the tool have a global presence.

@wincowgerDEV
Copy link
Collaborator Author

Please review and incorporate suggested changes, as outlined in the comments.

All of your comments have been incorporated Gina :) Thanks for the great feedback.

@wincowgerDEV
Copy link
Collaborator Author

@feydan I have gone through and made all requested changes to the manuscript. Could you merge the PR to main? Once it is merged to the main, I can go ahead and submit the manuscript :)

@wincowgerDEV
Copy link
Collaborator Author

@gdurante2019 just making sure before we merge, did I address all your comments?

@wincowgerDEV
Copy link
Collaborator Author

@shollingsworth not sure who has permission to merge this pull request but I believe everything has been addressed and it is ready to be merged.

@shollingsworth
Copy link
Collaborator

@shollingsworth not sure who has permission to merge this pull request but I believe everything has been addressed and it is ready to be merged.

@gdurante2019 needs to re-review, once she hits approve we should be able to merge.

gdurante2019
gdurante2019 approved these changes Nov 28, 2022
View reviewed changes
Copy link
Collaborator

@gdurante2019 gdurante2019 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I've suggested a couple of minor edits as comments. Please check those out and decide whether or not you'd like to incorporate. Thanks!

paper.md Outdated Show resolved Hide resolved
paper.md Outdated Show resolved Hide resolved
paper.md Outdated Show resolved Hide resolved
@wincowgerDEV wincowgerDEV merged commit 19270f0 into production Nov 28, 2022
shollingsworth pushed a commit that referenced this pull request Jan 12, 2023
@wincowgerDEV
deleted about.Vue (#90)
a6f4242 
* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* updated openid thumbprint for github (#87)

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* demo backend interaction (#88)

* deleted about.Vue

Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>
shollingsworth pushed a commit that referenced this pull request Feb 2, 2023
@dependabot @wincowgerDEV
Bump simple-git from 3.5.0 to 3.16.0 in /backend (#95)
c61de3e 
* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* updated openid thumbprint for github (#87)

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* demo backend interaction (#88)

* Bump simple-git from 3.5.0 to 3.16.0 in /backend

Bumps [simple-git](https://github.com/steveukx/git-js/tree/HEAD/simple-git) from 3.5.0 to 3.16.0.
- [Release notes](https://github.com/steveukx/git-js/releases)
- [Changelog](https://github.com/steveukx/git-js/blob/main/simple-git/CHANGELOG.md)
- [Commits](https://github.com/steveukx/git-js/commits/[email protected]/simple-git)

---
updated-dependencies:
- dependency-name: simple-git
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
shollingsworth pushed a commit that referenced this pull request Feb 4, 2023
Manuscript (#69)
ed90d65 
* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)
shollingsworth added a commit that referenced this pull request Mar 2, 2023
@shollingsworth @zfi
@feydan @gdurante2019 @wincowgerDEV @dependabot
mutliple security fixes, disabled classification, improved label pres…
ed2c0e8 
…entation (#103)

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

* Testing coco (#28)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

* removed symlink to web_model

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Changed upload behaviour

* Refactored upload dialog / drop area

* added more model samples
* removed dropzone package

* Fixed issue with remove / key and array order

* Removed lab / test for deployed versions of environment

* Added about page

* Forgot to update the metadata text

* Yolov5-Taco web model #7 (#30)

* Testing tf_web model export

* removing pyright

* Working version of taco dataset + initial build instructions

* Created links to code4sac and the github project

Added jupyter notebook files for new training as well as using existing
training data

* Adjusted new training jupyter notebook

* Testing change to model loading in AWS

* Try 2 on loading model

* Try 3 on loading model

* Reverting changes (has to do with basic auth url)

* Removed old react frontend directory

* Removed old react frontend directory (#34)

* Moving domain from codefordev to trashai.org

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixes for #36, #35, #32 + download all feature, and backend refactor w/ dedup (#38)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixing file ext name issue with s3 bucket upload on backend

* bugfix on s3 naming with file extension (#40)

* Added magnifying feature for larger images

* filling out the about page (#45)

* filling out the about page

* adding article

* better formatting

* Made about page default #49

* Added "Samples" button to upload tab closes #50

* Making about updates specified in #48 (#51)

* Making about updates specified in #48

* removing space

* small about update

* Demoing the CI/CD integration

* Typescript refactor Version 1

* removed nuxt

* removed more files

* adjusted build commands

* fixed height issue with uploads

* re-implemented backend

* adjusted frontend deploy stack

* Added github secret for google maps api key

* Added dockerfile for frontend

* added jszip

* Fixed android upload gps issue, fixed mobile status truncating issue

* removed uneeded logo files

* Typescript refactor (#58)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixing file ext name issue with s3 bucket upload on backend

* Promote staging updates to prod (#52)

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

* Testing coco (#28)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

* removed symlink to web_model

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Changed upload behaviour

* Refactored upload dialog / drop area

* added more model samples
* removed dropzone package

* Fixed issue with remove / key and array order

* Removed lab / test for deployed versions of environment

* Added about page

* Forgot to update the metadata text

* Yolov5-Taco web model #7 (#30)

* Testing tf_web model export

* removing pyright

* Working version of taco dataset + initial build instructions

* Created links to code4sac and the github project

Added jupyter notebook files for new training as well as using existing
training data

* Adjusted new training jupyter notebook

* Testing change to model loading in AWS

* Try 2 on loading model

* Try 3 on loading model

* Reverting changes (has to do with basic auth url)

* Removed old react frontend directory

* Removed old react frontend directory (#34)

* Moving domain from codefordev to trashai.org

* Fixes for #36, #35, #32 + download all feature, and backend refactor w/ dedup (#38)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* bugfix on s3 naming with file extension (#40)

* Added magnifying feature for larger images

* filling out the about page (#45)

* filling out the about page

* adding article

* better formatting

* Made about page default #49

* Added "Samples" button to upload tab closes #50

* Making about updates specified in #48 (#51)

* Making about updates specified in #48

* removing space

* small about update

Co-authored-by: Steven Hollingsworth <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Typescript refactor Version 1

* removed nuxt

* removed more files

* adjusted build commands

* fixed height issue with uploads

* re-implemented backend

* adjusted frontend deploy stack

* Added github secret for google maps api key

* Added dockerfile for frontend

* added jszip

* Fixed android upload gps issue, fixed mobile status truncating issue

* removed uneeded logo files

Co-authored-by: Dan Fey <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* updated deploy scripts

* testing config update

* added vite

* testing vite

* testing vite

* testing deploy

* adjusted permissions to allow access to public bucket

* still testing

* arg!

* Updating about page (#64)

* Updating about page to show Steve as the lead dev and adding feedback form

* making about pages consistent

* adding google analytics script (#67)

* removing kaggle depedency on running model notebook (#82)

* Updated UI to prepare to allow classifications (#63)

* Changes below

* adjusted dialog for lower parts of the image
* updated for mobile
* Added display div, added scores, adjusted the way labels are applied.
* Classification widgets

* merging staging

* updating Upload tab link in about page

* Removed duplicate about.vue page, removed duplicate function from utils.ts

Co-authored-by: Dan Fey <[email protected]>

* added missing rxjs package

* bugfix on deploy script (testing)

* Add files to run notebook on MacBook M1 machine (#81)

* deleted about.Vue (#90)

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* updated openid thumbprint for github (#87)

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* demo backend interaction (#88)

* deleted about.Vue

Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>

* changed docker-compose to docker compose

* Bump moment-timezone from 0.5.34 to 0.5.40 in /backend

Bumps [moment-timezone](https://github.com/moment/moment-timezone) from 0.5.34 to 0.5.40.
- [Release notes](https://github.com/moment/moment-timezone/releases)
- [Changelog](https://github.com/moment/moment-timezone/blob/develop/changelog.md)
- [Commits](moment/moment-timezone@0.5.34...0.5.40)

---
updated-dependencies:
- dependency-name: moment-timezone
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump simple-git from 3.5.0 to 3.16.0 in /backend (#95)

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* updated openid thumbprint for github (#87)

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* demo backend interaction (#88)

* Bump simple-git from 3.5.0 to 3.16.0 in /backend

Bumps [simple-git](https://github.com/steveukx/git-js/tree/HEAD/simple-git) from 3.5.0 to 3.16.0.
- [Release notes](https://github.com/steveukx/git-js/releases)
- [Changelog](https://github.com/steveukx/git-js/blob/main/simple-git/CHANGELOG.md)
- [Commits](https://github.com/steveukx/git-js/commits/[email protected]/simple-git)

---
updated-dependencies:
- dependency-name: simple-git
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump http-cache-semantics from 4.1.0 to 4.1.1 in /infra

Bumps [http-cache-semantics](https://github.com/kornelski/http-cache-semantics) from 4.1.0 to 4.1.1.
- [Release notes](https://github.com/kornelski/http-cache-semantics/releases)
- [Commits](https://github.com/kornelski/http-cache-semantics/commits)

---
updated-dependencies:
- dependency-name: http-cache-semantics
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump cookiejar from 2.1.3 to 2.1.4 in /infra

Bumps [cookiejar](https://github.com/bmeck/node-cookiejar) from 2.1.3 to 2.1.4.
- [Release notes](https://github.com/bmeck/node-cookiejar/releases)
- [Commits](https://github.com/bmeck/node-cookiejar/commits)

---
updated-dependencies:
- dependency-name: cookiejar
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump json5 from 2.2.1 to 2.2.3 in /infra

Bumps [json5](https://github.com/json5/json5) from 2.2.1 to 2.2.3.
- [Release notes](https://github.com/json5/json5/releases)
- [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
- [Commits](json5/json5@v2.2.1...v2.2.3)

---
updated-dependencies:
- dependency-name: json5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /infra

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* Bump moment-timezone from 0.5.34 to 0.5.40 in /backend

Bumps [moment-timezone](https://github.com/moment/moment-timezone) from 0.5.34 to 0.5.40.
- [Release notes](https://github.com/moment/moment-timezone/releases)
- [Changelog](https://github.com/moment/moment-timezone/blob/develop/changelog.md)
- [Commits](moment/moment-timezone@0.5.34...0.5.40)

---
updated-dependencies:
- dependency-name: moment-timezone
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /backend (#94)

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump cookiejar from 2.1.3 to 2.1.4 in /infra

Bumps [cookiejar](https://github.com/bmeck/node-cookiejar) from 2.1.3 to 2.1.4.
- [Release notes](https://github.com/bmeck/node-cookiejar/releases)
- [Commits](https://github.com/bmeck/node-cookiejar/commits)

---
updated-dependencies:
- dependency-name: cookiejar
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump http-cache-semantics from 4.1.0 to 4.1.1 in /infra

Bumps [http-cache-semantics](https://github.com/kornelski/http-cache-semantics) from 4.1.0 to 4.1.1.
- [Release notes](https://github.com/kornelski/http-cache-semantics/releases)
- [Commits](https://github.com/kornelski/http-cache-semantics/commits)

---
updated-dependencies:
- dependency-name: http-cache-semantics
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump json5 from 2.2.1 to 2.2.3 in /infra

Bumps [json5](https://github.com/json5/json5) from 2.2.1 to 2.2.3.
- [Release notes](https://github.com/json5/json5/releases)
- [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
- [Commits](json5/json5@v2.2.1...v2.2.3)

---
updated-dependencies:
- dependency-name: json5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /infra

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* disabled draw actions per issue 89 (#102)

* reset yarn.lock

* Cosmetic adjustments to image view screen

* Removed uneeded files, added troubleshooting section

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>
Co-authored-by: Dan Fey <[email protected]>
Co-authored-by: Gina Durante <[email protected]>
Co-authored-by: Leonidas Gkimisis <[email protected]>
Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
shollingsworth added a commit that referenced this pull request May 4, 2023
@shollingsworth @zfi
@feydan @gdurante2019 @wincowgerDEV @dependabot
Updated Contributor section of the readme (#154)
ef38e4c 
* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

* Testing coco (#28)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

* removed symlink to web_model

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Changed upload behaviour

* Refactored upload dialog / drop area

* added more model samples
* removed dropzone package

* Fixed issue with remove / key and array order

* Removed lab / test for deployed versions of environment

* Added about page

* Forgot to update the metadata text

* Yolov5-Taco web model #7 (#30)

* Testing tf_web model export

* removing pyright

* Working version of taco dataset + initial build instructions

* Created links to code4sac and the github project

Added jupyter notebook files for new training as well as using existing
training data

* Adjusted new training jupyter notebook

* Testing change to model loading in AWS

* Try 2 on loading model

* Try 3 on loading model

* Reverting changes (has to do with basic auth url)

* Removed old react frontend directory

* Removed old react frontend directory (#34)

* Moving domain from codefordev to trashai.org

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixes for #36, #35, #32 + download all feature, and backend refactor w/ dedup (#38)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixing file ext name issue with s3 bucket upload on backend

* bugfix on s3 naming with file extension (#40)

* Added magnifying feature for larger images

* filling out the about page (#45)

* filling out the about page

* adding article

* better formatting

* Made about page default #49

* Added "Samples" button to upload tab closes #50

* Making about updates specified in #48 (#51)

* Making about updates specified in #48

* removing space

* small about update

* Demoing the CI/CD integration

* Typescript refactor Version 1

* removed nuxt

* removed more files

* adjusted build commands

* fixed height issue with uploads

* re-implemented backend

* adjusted frontend deploy stack

* Added github secret for google maps api key

* Added dockerfile for frontend

* added jszip

* Fixed android upload gps issue, fixed mobile status truncating issue

* removed uneeded logo files

* Typescript refactor (#58)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixing file ext name issue with s3 bucket upload on backend

* Promote staging updates to prod (#52)

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

* Testing coco (#28)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

* removed symlink to web_model

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Changed upload behaviour

* Refactored upload dialog / drop area

* added more model samples
* removed dropzone package

* Fixed issue with remove / key and array order

* Removed lab / test for deployed versions of environment

* Added about page

* Forgot to update the metadata text

* Yolov5-Taco web model #7 (#30)

* Testing tf_web model export

* removing pyright

* Working version of taco dataset + initial build instructions

* Created links to code4sac and the github project

Added jupyter notebook files for new training as well as using existing
training data

* Adjusted new training jupyter notebook

* Testing change to model loading in AWS

* Try 2 on loading model

* Try 3 on loading model

* Reverting changes (has to do with basic auth url)

* Removed old react frontend directory

* Removed old react frontend directory (#34)

* Moving domain from codefordev to trashai.org

* Fixes for #36, #35, #32 + download all feature, and backend refactor w/ dedup (#38)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* bugfix on s3 naming with file extension (#40)

* Added magnifying feature for larger images

* filling out the about page (#45)

* filling out the about page

* adding article

* better formatting

* Made about page default #49

* Added "Samples" button to upload tab closes #50

* Making about updates specified in #48 (#51)

* Making about updates specified in #48

* removing space

* small about update

Co-authored-by: Steven Hollingsworth <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Typescript refactor Version 1

* removed nuxt

* removed more files

* adjusted build commands

* fixed height issue with uploads

* re-implemented backend

* adjusted frontend deploy stack

* Added github secret for google maps api key

* Added dockerfile for frontend

* added jszip

* Fixed android upload gps issue, fixed mobile status truncating issue

* removed uneeded logo files

Co-authored-by: Dan Fey <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* updated deploy scripts

* testing config update

* added vite

* testing vite

* testing vite

* testing deploy

* adjusted permissions to allow access to public bucket

* still testing

* arg!

* Updating about page (#64)

* Updating about page to show Steve as the lead dev and adding feedback form

* making about pages consistent

* adding google analytics script (#67)

* removing kaggle depedency on running model notebook (#82)

* Updated UI to prepare to allow classifications (#63)

* Changes below

* adjusted dialog for lower parts of the image
* updated for mobile
* Added display div, added scores, adjusted the way labels are applied.
* Classification widgets

* merging staging

* updating Upload tab link in about page

* Removed duplicate about.vue page, removed duplicate function from utils.ts

Co-authored-by: Dan Fey <[email protected]>

* added missing rxjs package

* bugfix on deploy script (testing)

* Add files to run notebook on MacBook M1 machine (#81)

* deleted about.Vue (#90)

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* updated openid thumbprint for github (#87)

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* demo backend interaction (#88)

* deleted about.Vue

Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>

* changed docker-compose to docker compose

* Bump moment-timezone from 0.5.34 to 0.5.40 in /backend

Bumps [moment-timezone](https://github.com/moment/moment-timezone) from 0.5.34 to 0.5.40.
- [Release notes](https://github.com/moment/moment-timezone/releases)
- [Changelog](https://github.com/moment/moment-timezone/blob/develop/changelog.md)
- [Commits](moment/moment-timezone@0.5.34...0.5.40)

---
updated-dependencies:
- dependency-name: moment-timezone
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump simple-git from 3.5.0 to 3.16.0 in /backend (#95)

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* updated openid thumbprint for github (#87)

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* demo backend interaction (#88)

* Bump simple-git from 3.5.0 to 3.16.0 in /backend

Bumps [simple-git](https://github.com/steveukx/git-js/tree/HEAD/simple-git) from 3.5.0 to 3.16.0.
- [Release notes](https://github.com/steveukx/git-js/releases)
- [Changelog](https://github.com/steveukx/git-js/blob/main/simple-git/CHANGELOG.md)
- [Commits](https://github.com/steveukx/git-js/commits/[email protected]/simple-git)

---
updated-dependencies:
- dependency-name: simple-git
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump http-cache-semantics from 4.1.0 to 4.1.1 in /infra

Bumps [http-cache-semantics](https://github.com/kornelski/http-cache-semantics) from 4.1.0 to 4.1.1.
- [Release notes](https://github.com/kornelski/http-cache-semantics/releases)
- [Commits](https://github.com/kornelski/http-cache-semantics/commits)

---
updated-dependencies:
- dependency-name: http-cache-semantics
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump cookiejar from 2.1.3 to 2.1.4 in /infra

Bumps [cookiejar](https://github.com/bmeck/node-cookiejar) from 2.1.3 to 2.1.4.
- [Release notes](https://github.com/bmeck/node-cookiejar/releases)
- [Commits](https://github.com/bmeck/node-cookiejar/commits)

---
updated-dependencies:
- dependency-name: cookiejar
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump json5 from 2.2.1 to 2.2.3 in /infra

Bumps [json5](https://github.com/json5/json5) from 2.2.1 to 2.2.3.
- [Release notes](https://github.com/json5/json5/releases)
- [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
- [Commits](json5/json5@v2.2.1...v2.2.3)

---
updated-dependencies:
- dependency-name: json5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /infra

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* Bump moment-timezone from 0.5.34 to 0.5.40 in /backend

Bumps [moment-timezone](https://github.com/moment/moment-timezone) from 0.5.34 to 0.5.40.
- [Release notes](https://github.com/moment/moment-timezone/releases)
- [Changelog](https://github.com/moment/moment-timezone/blob/develop/changelog.md)
- [Commits](moment/moment-timezone@0.5.34...0.5.40)

---
updated-dependencies:
- dependency-name: moment-timezone
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /backend (#94)

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump cookiejar from 2.1.3 to 2.1.4 in /infra

Bumps [cookiejar](https://github.com/bmeck/node-cookiejar) from 2.1.3 to 2.1.4.
- [Release notes](https://github.com/bmeck/node-cookiejar/releases)
- [Commits](https://github.com/bmeck/node-cookiejar/commits)

---
updated-dependencies:
- dependency-name: cookiejar
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump http-cache-semantics from 4.1.0 to 4.1.1 in /infra

Bumps [http-cache-semantics](https://github.com/kornelski/http-cache-semantics) from 4.1.0 to 4.1.1.
- [Release notes](https://github.com/kornelski/http-cache-semantics/releases)
- [Commits](https://github.com/kornelski/http-cache-semantics/commits)

---
updated-dependencies:
- dependency-name: http-cache-semantics
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump json5 from 2.2.1 to 2.2.3 in /infra

Bumps [json5](https://github.com/json5/json5) from 2.2.1 to 2.2.3.
- [Release notes](https://github.com/json5/json5/releases)
- [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
- [Commits](json5/json5@v2.2.1...v2.2.3)

---
updated-dependencies:
- dependency-name: json5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /infra

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* disabled draw actions per issue 89 (#102)

* reset yarn.lock

* Cosmetic adjustments to image view screen

* Removed uneeded files, added troubleshooting section

* Updated README to include link to the project board

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>
Co-authored-by: Dan Fey <[email protected]>
Co-authored-by: Gina Durante <[email protected]>
Co-authored-by: Leonidas Gkimisis <[email protected]>
Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
shollingsworth added a commit that referenced this pull request May 11, 2023
@shollingsworth @zfi
@feydan @gdurante2019 @wincowgerDEV @dependabot @lovejavaee
Catching up staging with production (#155)
1d64a02 
* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

* Testing coco (#28)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

* removed symlink to web_model

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Changed upload behaviour

* Refactored upload dialog / drop area

* added more model samples
* removed dropzone package

* Fixed issue with remove / key and array order

* Removed lab / test for deployed versions of environment

* Added about page

* Forgot to update the metadata text

* Yolov5-Taco web model #7 (#30)

* Testing tf_web model export

* removing pyright

* Working version of taco dataset + initial build instructions

* Created links to code4sac and the github project

Added jupyter notebook files for new training as well as using existing
training data

* Adjusted new training jupyter notebook

* Testing change to model loading in AWS

* Try 2 on loading model

* Try 3 on loading model

* Reverting changes (has to do with basic auth url)

* Removed old react frontend directory

* Removed old react frontend directory (#34)

* Moving domain from codefordev to trashai.org

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixes for #36, #35, #32 + download all feature, and backend refactor w/ dedup (#38)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixing file ext name issue with s3 bucket upload on backend

* bugfix on s3 naming with file extension (#40)

* Added magnifying feature for larger images

* filling out the about page (#45)

* filling out the about page

* adding article

* better formatting

* Made about page default #49

* Added "Samples" button to upload tab closes #50

* Making about updates specified in #48 (#51)

* Making about updates specified in #48

* removing space

* small about update

* Demoing the CI/CD integration

* Typescript refactor Version 1

* removed nuxt

* removed more files

* adjusted build commands

* fixed height issue with uploads

* re-implemented backend

* adjusted frontend deploy stack

* Added github secret for google maps api key

* Added dockerfile for frontend

* added jszip

* Fixed android upload gps issue, fixed mobile status truncating issue

* removed uneeded logo files

* Typescript refactor (#58)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* Fixing file ext name issue with s3 bucket upload on backend

* Promote staging updates to prod (#52)

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

* Testing coco (#28)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

* removed symlink to web_model

* Coco POC #8 #9 (#19) (#26)

* Fixed some package.json issues, updated some entries in .gitignore and .in (for those who would use it)

* saving work

* saving work... having issues with async reading file then loading it in coco

* coco confirmed working

* Added JSON metadata

* Arg! this should work

* Removed Pro port mapping from localstack docker-compose

* Added multiple file upload and cleaned up presentation a bit

Looks like there is a problem with uploading multiple files at once, the
predictions don't always trigger

* Minor updates to MacOS details (#24)

Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* removed symlink

Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Changed upload behaviour

* Refactored upload dialog / drop area

* added more model samples
* removed dropzone package

* Fixed issue with remove / key and array order

* Removed lab / test for deployed versions of environment

* Added about page

* Forgot to update the metadata text

* Yolov5-Taco web model #7 (#30)

* Testing tf_web model export

* removing pyright

* Working version of taco dataset + initial build instructions

* Created links to code4sac and the github project

Added jupyter notebook files for new training as well as using existing
training data

* Adjusted new training jupyter notebook

* Testing change to model loading in AWS

* Try 2 on loading model

* Try 3 on loading model

* Reverting changes (has to do with basic auth url)

* Removed old react frontend directory

* Removed old react frontend directory (#34)

* Moving domain from codefordev to trashai.org

* Fixes for #36, #35, #32 + download all feature, and backend refactor w/ dedup (#38)

* Replaced Backend with python, fixed infa deploy logic # 35

* backend now tracks images by their sha256 value to avoid duplication
* added new manual action to infra deploy logic # 35
* added log retention logic to backend deploy # 36
* added new fields to deploy_map
    "log_retention_days": 30,
    "dns_domain_map_root": true,
* made github_actions script aware of domain, and "is_root_domain" deploy_map setting

* Addresses # 32, added new features amongst them a download all button

* added new packages to UI
    * "dexie" local storage w/ indexeddb browser store, localstore
      couldn't cut it
    * "file-saver": allows us to do a saveas with the zip file
    * "jszip": zip libarary to address #
* indicators for backend upload success, and if the image has been seen
  before
* now looks good in mobile as well as desktop
* also using indexeddb introduced caching the file objects (for download later) and caching of the tf model

* Added support for python packages

* Adjusted permission to add/remove layers in the prefix namespace

* fixed permissions issue for layers / backend deploy

* Added hash and other metadata to the metadata display and hover over filename

* Fixed metadata download and info button

* bugfix on s3 naming with file extension (#40)

* Added magnifying feature for larger images

* filling out the about page (#45)

* filling out the about page

* adding article

* better formatting

* Made about page default #49

* Added "Samples" button to upload tab closes #50

* Making about updates specified in #48 (#51)

* Making about updates specified in #48

* removing space

* small about update

Co-authored-by: Steven Hollingsworth <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* Typescript refactor Version 1

* removed nuxt

* removed more files

* adjusted build commands

* fixed height issue with uploads

* re-implemented backend

* adjusted frontend deploy stack

* Added github secret for google maps api key

* Added dockerfile for frontend

* added jszip

* Fixed android upload gps issue, fixed mobile status truncating issue

* removed uneeded logo files

Co-authored-by: Dan Fey <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>

* updated deploy scripts

* testing config update

* added vite

* testing vite

* testing vite

* testing deploy

* adjusted permissions to allow access to public bucket

* still testing

* arg!

* Updating about page (#64)

* Updating about page to show Steve as the lead dev and adding feedback form

* making about pages consistent

* adding google analytics script (#67)

* removing kaggle depedency on running model notebook (#82)

* Updated UI to prepare to allow classifications (#63)

* Changes below

* adjusted dialog for lower parts of the image
* updated for mobile
* Added display div, added scores, adjusted the way labels are applied.
* Classification widgets

* merging staging

* updating Upload tab link in about page

* Removed duplicate about.vue page, removed duplicate function from utils.ts

Co-authored-by: Dan Fey <[email protected]>

* added missing rxjs package

* bugfix on deploy script (testing)

* Add files to run notebook on MacBook M1 machine (#81)

* deleted about.Vue (#90)

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* updated openid thumbprint for github (#87)

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* demo backend interaction (#88)

* deleted about.Vue

Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>

* changed docker-compose to docker compose

* Bump moment-timezone from 0.5.34 to 0.5.40 in /backend

Bumps [moment-timezone](https://github.com/moment/moment-timezone) from 0.5.34 to 0.5.40.
- [Release notes](https://github.com/moment/moment-timezone/releases)
- [Changelog](https://github.com/moment/moment-timezone/blob/develop/changelog.md)
- [Commits](moment/moment-timezone@0.5.34...0.5.40)

---
updated-dependencies:
- dependency-name: moment-timezone
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump simple-git from 3.5.0 to 3.16.0 in /backend (#95)

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* updated openid thumbprint for github (#87)

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* demo backend interaction (#88)

* Bump simple-git from 3.5.0 to 3.16.0 in /backend

Bumps [simple-git](https://github.com/steveukx/git-js/tree/HEAD/simple-git) from 3.5.0 to 3.16.0.
- [Release notes](https://github.com/steveukx/git-js/releases)
- [Changelog](https://github.com/steveukx/git-js/blob/main/simple-git/CHANGELOG.md)
- [Commits](https://github.com/steveukx/git-js/commits/[email protected]/simple-git)

---
updated-dependencies:
- dependency-name: simple-git
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump http-cache-semantics from 4.1.0 to 4.1.1 in /infra

Bumps [http-cache-semantics](https://github.com/kornelski/http-cache-semantics) from 4.1.0 to 4.1.1.
- [Release notes](https://github.com/kornelski/http-cache-semantics/releases)
- [Commits](https://github.com/kornelski/http-cache-semantics/commits)

---
updated-dependencies:
- dependency-name: http-cache-semantics
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump cookiejar from 2.1.3 to 2.1.4 in /infra

Bumps [cookiejar](https://github.com/bmeck/node-cookiejar) from 2.1.3 to 2.1.4.
- [Release notes](https://github.com/bmeck/node-cookiejar/releases)
- [Commits](https://github.com/bmeck/node-cookiejar/commits)

---
updated-dependencies:
- dependency-name: cookiejar
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump json5 from 2.2.1 to 2.2.3 in /infra

Bumps [json5](https://github.com/json5/json5) from 2.2.1 to 2.2.3.
- [Release notes](https://github.com/json5/json5/releases)
- [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
- [Commits](json5/json5@v2.2.1...v2.2.3)

---
updated-dependencies:
- dependency-name: json5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /infra

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Local Deployment (#86)

* Testing fixes in issue 85

* changed platform in dockerfile

* add wsl2 instructions

* add windows docker install instructions

* Update localdev.md

* reorganization

* Update localdev.md

* Update localdev.md

* cleanup

* Update localdev.md

* Update localdev.md

* fix error that was preventing initial install.

Co-authored-by: Steven Hollingsworth <[email protected]>

* Manuscript (#69)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* Bump moment-timezone from 0.5.34 to 0.5.40 in /backend

Bumps [moment-timezone](https://github.com/moment/moment-timezone) from 0.5.34 to 0.5.40.
- [Release notes](https://github.com/moment/moment-timezone/releases)
- [Changelog](https://github.com/moment/moment-timezone/blob/develop/changelog.md)
- [Commits](moment/moment-timezone@0.5.34...0.5.40)

---
updated-dependencies:
- dependency-name: moment-timezone
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /backend (#94)

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump cookiejar from 2.1.3 to 2.1.4 in /infra

Bumps [cookiejar](https://github.com/bmeck/node-cookiejar) from 2.1.3 to 2.1.4.
- [Release notes](https://github.com/bmeck/node-cookiejar/releases)
- [Commits](https://github.com/bmeck/node-cookiejar/commits)

---
updated-dependencies:
- dependency-name: cookiejar
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump http-cache-semantics from 4.1.0 to 4.1.1 in /infra

Bumps [http-cache-semantics](https://github.com/kornelski/http-cache-semantics) from 4.1.0 to 4.1.1.
- [Release notes](https://github.com/kornelski/http-cache-semantics/releases)
- [Commits](https://github.com/kornelski/http-cache-semantics/commits)

---
updated-dependencies:
- dependency-name: http-cache-semantics
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump json5 from 2.2.1 to 2.2.3 in /infra

Bumps [json5](https://github.com/json5/json5) from 2.2.1 to 2.2.3.
- [Release notes](https://github.com/json5/json5/releases)
- [Changelog](https://github.com/json5/json5/blob/main/CHANGELOG.md)
- [Commits](json5/json5@v2.2.1...v2.2.3)

---
updated-dependencies:
- dependency-name: json5
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* Bump luxon from 1.28.0 to 1.28.1 in /infra

Bumps [luxon](https://github.com/moment/luxon) from 1.28.0 to 1.28.1.
- [Release notes](https://github.com/moment/luxon/releases)
- [Changelog](https://github.com/moment/luxon/blob/master/CHANGELOG.md)
- [Commits](moment/luxon@1.28.0...1.28.1)

---
updated-dependencies:
- dependency-name: luxon
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>

* disabled draw actions per issue 89 (#102)

* reset yarn.lock

* Cosmetic adjustments to image view screen

* Removed uneeded files, added troubleshooting section

* Updated README to include link to the project board

* 127 feature docker compose only deployment (#157)

* Add tags to ignore. (commit message: "Ignore tags")

* 🎉 feat(frontend): add Dockerfile and docker-compose.yml for frontend

* Refactor frontend Dockerfile

* Bump vm2 from 3.9.16 to 3.9.17 in /infra (#148)

Bumps [vm2](https://github.com/patriksimek/vm2) from 3.9.16 to 3.9.17.
- [Release notes](https://github.com/patriksimek/vm2/releases)
- [Changelog](https://github.com/patriksimek/vm2/blob/master/CHANGELOG.md)
- [Commits](patriksimek/vm2@3.9.16...3.9.17)

---
updated-dependencies:
- dependency-name: vm2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Jim Ewald <[email protected]>
Co-authored-by: Jim <[email protected]>
Co-authored-by: Dan Fey <[email protected]>
Co-authored-by: Gina Durante <[email protected]>
Co-authored-by: Leonidas Gkimisis <[email protected]>
Co-authored-by: Win Cowger, PhD <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Jeff M <[email protected]>
feydan pushed a commit that referenced this pull request Jul 22, 2023
@wincowgerDEV
Review1 (#181)
402e595 
* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add submitted badge

* update dois

* Update paper.md

#122

* Update paper.md

add Elizabeth to ack

* Update paper.md

add funder possibility lab

* Update paper.md

add funder.

* Update README.md

* add r code for analyzing data

* remove unnecessary code.

* trying to fix the unexpected period issue, not sure where it is coming from.

* revert bib to test

* add dois

* update paper acknowledgments and links.

* add comments.

* remove empty line

* Update about.vue

update about

* Update about.vue

add tutorial

* Update README.md

update video

* Update paper.md

update video
feydan added a commit that referenced this pull request Aug 5, 2023
@feydan @dependabot
@Zesky665 @shollingsworth @wincowgerDEV
Merging latest staging into production (#188)
fbba50e 
* Adding a link to Running-man-01/trashai_nbs project

* Bump vm2 from 3.9.17 to 3.9.19 in /infra (#162)

Bumps [vm2](https://github.com/patriksimek/vm2) from 3.9.17 to 3.9.19.
- [Release notes](https://github.com/patriksimek/vm2/releases)
- [Changelog](https://github.com/patriksimek/vm2/blob/master/CHANGELOG.md)
- [Commits](patriksimek/vm2@3.9.17...3.9.19)

---
updated-dependencies:
- dependency-name: vm2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump vite from 3.2.5 to 3.2.7 in /infra (#165)

Bumps [vite](https://github.com/vitejs/vite/tree/HEAD/packages/vite) from 3.2.5 to 3.2.7.
- [Release notes](https://github.com/vitejs/vite/releases)
- [Changelog](https://github.com/vitejs/vite/blob/v3.2.7/packages/vite/CHANGELOG.md)
- [Commits](https://github.com/vitejs/vite/commits/v3.2.7/packages/vite)

---
updated-dependencies:
- dependency-name: vite
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump vite from 3.0.4 to 3.2.7 in /frontend (#164)

Bumps [vite](https://github.com/vitejs/vite/tree/HEAD/packages/vite) from 3.0.4 to 3.2.7.
- [Release notes](https://github.com/vitejs/vite/releases)
- [Changelog](https://github.com/vitejs/vite/blob/v3.2.7/packages/vite/CHANGELOG.md)
- [Commits](https://github.com/vitejs/vite/commits/v3.2.7/packages/vite)

---
updated-dependencies:
- dependency-name: vite
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* fixing build and fixing local (#170)

* Add testing instructions and auto tests (#171)

* Adding a link to Running-man-01/trashai_nbs project (#168)

* update frontend app doc

* Add manual instructions.

* Added test-ids

* Add test-ids to the navigation tabs

* Add smoke test draft

* Add placeholder file

* Add photos for manual testing instructions

* Upgrade node version

* Remove cypress

* Add test ids to summary page

* Jest + Puppeteer setup

* Add smoke test

* Added back manual instructions

* Add images for manual instructions

* Add instruction for running auto tests

---------

Co-authored-by: Dan Fey <[email protected]>

* Adding schema files to download (#173)

* adding schema files to the zip download

* revert yarn change

* fixing list

* indentation

* 124 summary csv files (#175)

* aAdding summary csv reports

* adding comments

* fixing off by 1 error in summary counts (#177)

* Consistent csv delimiter (#179)

* Only using comma delimited for summary csv files and automatically quoting all string fields in the csv

* Simplifying generateSummaryFiles and removing array mutation

* fixing unit test

* only run typescript tests with test-ts

* Updated babel and dev package to run tests

---------

Co-authored-by: Steven Hollingsworth <[email protected]>

* Fixed broken yarn.lock

* Review1 (#181)

* my workflow

* example templates for manuscript.

* manuscript info

* update citations

* cleanup text

* cite

* update readme

* contribute

* add website badge

* update web link

* Update README.md

* Update README.md

* add video link

* auto update

* utility files device specific

* move the pdf generator to workflows

* test error in paper.bib

* test citation style

* add citations

* add a few more citations

* try without space

* add all

* no spaces allowed in citation names

* add demo images

* Update paper.md

* give images some space

* image captions

* add mention of wade

* update authors and acknowledgements

* Updated with Dan's Recs

* Mary Comments

#69 (comment)

* SteveO comments

#69 (review)

* Walter's comments

#69 (review)

* Create config.yml

* Create bug.yml

* Create feature.yml

* hyperlink

* Update bug.yml

* Update feature.yml

* Added in Kristiina and Kris's comments

* Update README.md

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add kris's comments

* add WSL2 link

* Update paper.md

* add acknowledgements

* #69 (comment)

* #69 (comment)

* #69 (comment)

* add submitted badge

* update dois

* Update paper.md

#122

* Update paper.md

add Elizabeth to ack

* Update paper.md

add funder possibility lab

* Update paper.md

add funder.

* Update README.md

* add r code for analyzing data

* remove unnecessary code.

* trying to fix the unexpected period issue, not sure where it is coming from.

* revert bib to test

* add dois

* update paper acknowledgments and links.

* add comments.

* remove empty line

* Update about.vue

update about

* Update about.vue

add tutorial

* Update README.md

update video

* Update paper.md

update video

* Bump word-wrap from 1.2.3 to 1.2.4 in /frontend (#187)

Bumps [word-wrap](https://github.com/jonschlinkert/word-wrap) from 1.2.3 to 1.2.4.
- [Release notes](https://github.com/jonschlinkert/word-wrap/releases)
- [Commits](jonschlinkert/word-wrap@1.2.3...1.2.4)

---
updated-dependencies:
- dependency-name: word-wrap
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump word-wrap from 1.2.3 to 1.2.4 in /infra (#186)

Bumps [word-wrap](https://github.com/jonschlinkert/word-wrap) from 1.2.3 to 1.2.4.
- [Release notes](https://github.com/jonschlinkert/word-wrap/releases)
- [Commits](jonschlinkert/word-wrap@1.2.3...1.2.4)

---
updated-dependencies:
- dependency-name: word-wrap
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump semver from 5.7.1 to 5.7.2 in /frontend (#185)

Bumps [semver](https://github.com/npm/node-semver) from 5.7.1 to 5.7.2.
- [Release notes](https://github.com/npm/node-semver/releases)
- [Changelog](https://github.com/npm/node-semver/blob/v5.7.2/CHANGELOG.md)
- [Commits](npm/node-semver@v5.7.1...v5.7.2)

---
updated-dependencies:
- dependency-name: semver
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump semver from 5.7.1 to 5.7.2 in /infra (#184)

Bumps [semver](https://github.com/npm/node-semver) from 5.7.1 to 5.7.2.
- [Release notes](https://github.com/npm/node-semver/releases)
- [Changelog](https://github.com/npm/node-semver/blob/v5.7.2/CHANGELOG.md)
- [Commits](npm/node-semver@v5.7.1...v5.7.2)

---
updated-dependencies:
- dependency-name: semver
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump tough-cookie from 4.1.2 to 4.1.3 in /infra (#182)

Bumps [tough-cookie](https://github.com/salesforce/tough-cookie) from 4.1.2 to 4.1.3.
- [Release notes](https://github.com/salesforce/tough-cookie/releases)
- [Changelog](https://github.com/salesforce/tough-cookie/blob/master/CHANGELOG.md)
- [Commits](salesforce/tough-cookie@v4.1.2...v4.1.3)

---
updated-dependencies:
- dependency-name: tough-cookie
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump semver from 5.7.1 to 5.7.2 in /backend (#183)

Bumps [semver](https://github.com/npm/node-semver) from 5.7.1 to 5.7.2.
- [Release notes](https://github.com/npm/node-semver/releases)
- [Changelog](https://github.com/npm/node-semver/blob/v5.7.2/CHANGELOG.md)
- [Commits](npm/node-semver@v5.7.1...v5.7.2)

---
updated-dependencies:
- dependency-name: semver
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Zesky665 <[email protected]>
Co-authored-by: Steven Hollingsworth <[email protected]>
Co-authored-by: Win Cowger, PhD <[email protected]>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@hernandezforges hernandezforges hernandezforges left review comments

@maryfnorris maryfnorris maryfnorris approved these changes

@gdurante2019 gdurante2019 gdurante2019 approved these changes

@feydan feydan feydan approved these changes

@shollingsworth shollingsworth shollingsworth approved these changes

@walteryu walteryu walteryu approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
7 participants
@wincowgerDEV @maryfnorris @shollingsworth @walteryu @feydan @hernandezforges @gdurante2019