[PRE REVIEW]: EHRs Data Harmonization Platform, an easy-to-use R package and shiny app based on recodeflow for harmonizing and deriving clinical features

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Submitting author: @davidechicco (Davide Chicco)
Repository: https://github.com/ArianAminoleslami/EHRs-Data-Harmonization-Platform
Branch with paper.md (empty if default branch):
Version: v.2.3.1
Editor: Pending
Reviewers: Pending
Managing EiC: Kevin M. Moerman

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Software report:

github.com/AlDanial/cloc v 1.90  T=0.02 s (606.8 files/s, 333351.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
CSV                              1              0              0           2251
R                                3           1200            233           2078
TeX                              1             59              0            448
Markdown                         7             92              0            231
-------------------------------------------------------------------------------
SUM:                            12           1351            233           5008
-------------------------------------------------------------------------------

Commit count by author:

   114	Arian Aminoleslami
     4	ArianAminoleslami

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Paper file info:

📄 Wordcount for paper.md is 1595

✅ The paper includes a Statement of need section

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License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1371/journal.pone.0017238 is OK
- 10.1007/978-1-0716-1839-4_12 is OK
- 10.18129/B9.bioc.annotate is OK
- 10.1093/bioinformatics/btab852 is OK
- 10.1038/nmeth.3252 is OK
- 10.1186/1471-2105-11-183 is OK
- 10.1186/s13059-019-1851-8 is OK
- 10.1186/s12859-015-0582-4 is OK
- 10.1109/TCBB.2019.2893170 is OK
- 10.1186/1471-2105-15-S15-S3 is OK
- 10.1038/s41598-017-05298-w is OK
- 10.1093/bioinformatics/bti722 is OK
- 10.1371/journal.pmed.0020124 is OK
- 10.1371/journal.pbio.1002106 is OK
- 10.1038/s41562-017-0189-z is OK
- 10.1371/journal.pone.0079729 is OK
- 10.18129/B9.bioc.diffcoexp is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: OHDP Datasets
- No DOI given, and none found for title: About OHDP
- No DOI given, and none found for title: Model your data
- No DOI given, and none found for title: Electronic health records to facilitate clinical r...
- No DOI given, and none found for title: The evolving use of electronic health records (EHR...
- No DOI given, and none found for title: Maelstrom Research guidelines for rigorous retrosp...
- No DOI given, and none found for title: RStudio: integrated development environment for R
- No DOI given, and none found for title: Estimation of extended mixed models using latent c...
- No DOI given, and none found for title: Paquid: longitudinal data on cognitive and physica...
- No DOI given, and none found for title: dxpr: an R package for generating analysis-ready d...

❌ MISSING DOIs

- 10.1038/s41598-020-73558-3 may be a valid DOI for title: Survival prediction of patients with sepsis from a...
- 10.1016/j.jbi.2022.104147 may be a valid DOI for title: Multiview incomplete knowledge graph Integration w...
- 10.1097/cce.0000000000000893 may be a valid DOI for title: A path to real-world evidence in critical care usi...
- 10.1016/j.jbi.2020.103421 may be a valid DOI for title: FAIR data sharing: the roles of common data elemen...
- 10.3390/app11178275 may be a valid DOI for title: Data harmonization for heterogeneous datasets: a s...
- 10.20944/preprints202206.0335.v1 may be a valid DOI for title: The DataHarmonizer: a tool for faster data harmoni...
- 10.32614/cran.package.retroharmonize may be a valid DOI for title: retroharmonize: ex post survey data harmonization
- 10.32614/cran.package.retroharmonize may be a valid DOI for title: retroharmonize: ex post survey data harmonization
- 10.1371/journal.pcbi.1006561 may be a valid DOI for title: Ten simple rules for documenting scientific softwa...
- 10.1093/bib/bbw134 may be a valid DOI for title: Top considerations for creating bioinformatics sof...
- 10.1055/s-0038-1638740 may be a valid DOI for title: Towards open collaborative health informatics-The ...
- 10.2190/cwk2-u7r6-vce0-e47p may be a valid DOI for title: Sex and gender: the challenges for epidemiologists
- 10.1038/s41591-022-01811-5 may be a valid DOI for title: Machine learning model to predict mental health cr...
- 10.1093/ije/23.6.1256 may be a valid DOI for title: Incidence of dementia and Alzheimer’s disease in e...
- 10.1038/s41592-018-0046-7 may be a valid DOI for title: Bioconda: sustainable and comprehensive software d...
- 10.21105/joss.00754 may be a valid DOI for title: sjmisc: data and variable transformation functions
- 10.21105/joss.00754 may be a valid DOI for title: sjmisc: data and variable transformation functions
- 10.32614/cran.package.recodeflow may be a valid DOI for title: recodeflow: interface functions for PMML creation,...
- 10.32614/cran.package.cchsflow may be a valid DOI for title: cchsflow: transforming and harmonizing CCHS variab...
- 10.17269/s41997-020-00470-8 may be a valid DOI for title: cchsflow: an open science approach to transform an...
- 10.3389/fdata.2019.00043 may be a valid DOI for title: Open science, open data, and open scholarship: Eur...

❌ INVALID DOIs

- None

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