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[PRE REVIEW]: BGmisc: An R Package for Extended Behavior Genetics Analysis #5894

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editorialbot opened this issue Sep 28, 2023 · 30 comments
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[PRE REVIEW]: BGmisc: An R Package for Extended Behavior Genetics Analysis #5894

editorialbot opened this issue Sep 28, 2023 · 30 comments
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HTML pre-review R TeX Track: 4 (SBCS) Social, Behavioral, and Cognitive Sciences

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editorialbot commented Sep 28, 2023 •
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Submitting author: @smasongarrison (S. Mason Garrison)
Repository: https://github.com/R-Computing-Lab/BGmisc/
Branch with paper.md (empty if default branch):
Version: v1.0
Editor: @osorensen
Reviewers: @wjakethompson, @mhu48
Managing EiC: Arfon Smith

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status

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HTML: <a href="https://joss.theoj.org/papers/ee3a025be4f61584f977a7657d936187"><img src="https://joss.theoj.org/papers/ee3a025be4f61584f977a7657d936187/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/ee3a025be4f61584f977a7657d936187/status.svg)](https://joss.theoj.org/papers/ee3a025be4f61584f977a7657d936187)

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Thanks for submitting your paper to JOSS @smasongarrison. Currently, there isn't a JOSS editor assigned to your paper.

@smasongarrison if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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@editorialbot editorialbot added pre-review Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning labels Sep 28, 2023
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Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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Software report:

github.com/AlDanial/cloc v 1.88  T=0.03 s (1059.9 files/s, 166165.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                             4            140              8           1794
R                               17            105            587            916
Markdown                         5            165              0            625
XML                              1              0              2            441
TeX                              1              9              0            201
Rmd                              6            165            289            114
YAML                             2              9              4             70
-------------------------------------------------------------------------------
SUM:                            36            593            890           4161
-------------------------------------------------------------------------------


gitinspector failed to run statistical information for the repository

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Wordcount for paper.md is 1203

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Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1086/279872 is OK
- 10.1159/000363105 is OK
- 10.1080/10705511.2018.1493385 is OK
- 10/f8rfrg is OK
- 10.1007/s10519-021-10055-x is OK
- 10.1007/s10519-020-10037-5 is OK
- 10/ff3dbm is OK
- 10.1007/s10519-008-9225-0 is OK
- 10.1007/978-0-387-21750-5_5 is OK
- 10.1111/j.2044-8317.1984.tb00802.x is OK

MISSING DOIs

- None

INVALID DOIs

- None

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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Five most similar historical JOSS papers:

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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before before considering asking the reviewers of these papers to review again for JOSS.

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arfon commented Sep 28, 2023

@editorialbot query scope

@smasongarrison – this submission is one the smaller side of what we'd typically publish here so I'm going to start a scope query with the broader editorial team. This will take a couple of weeks to complete.

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Submission flagged for editorial review.

@editorialbot editorialbot added the query-scope Submissions of uncertain scope for JOSS label Sep 28, 2023
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smasongarrison commented Sep 28, 2023 •
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@editorialbot query scope

@smasongarrison – this submission is one the smaller side of what we'd typically publish here so I'm going to start a scope query with the broader editorial team. This will take a couple of weeks to complete.

Could you expand upon this some more? Because I'm not sure, I'm understanding what you mean by small in scope.

Nevermind, I misread what you wrote.

@editorialbot editorialbot added Track: 4 (SBCS) Social, Behavioral, and Cognitive Sciences and removed Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning labels Nov 28, 2023
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@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

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@smasongarrison I am really sorry things are so slow-moving. I will try and focus on speeding this up, but at the moment I am struggling to find an editor with the appropriate expertise. If nobody is found soon, I will take this over myself.

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Five most similar historical JOSS papers:

bmgarch: An R-Package for Bayesian Multivariate GARCH models
Submitting author: @ph-rast
Handling editor: @jbytecode (Active)
Reviewers: @ChristopherLucas, @mwt
Similarity score: 0.8409

rTASSEL: An R interface to TASSEL for analyzing genomic diversity
Submitting author: @btmonier
Handling editor: @fboehm (Active)
Reviewers: @tkchafin, @tomsing1
Similarity score: 0.8323

genieR: An R package for inference of demographic history of phylogenies
Submitting author: @xiangfstats
Handling editor: @pjotrp (Retired)
Reviewers: @pboesu
Similarity score: 0.8306

GeneNetwork: framework for web-based genetics
Submitting author: @pjotrp
Handling editor: @arfon (Active)
Reviewers: @krother, @agarie
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rigr: Regression, Inference, and General Data Analysis Tools in R
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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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@fboehm @osorensen @jbytecode is anybody experienced and available to take this one? 😌

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Sure!

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@editorialbot add @osorensen as editor

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Assigned! @osorensen is now the editor

@osorensen osorensen removed the query-scope Submissions of uncertain scope for JOSS label Jan 7, 2024
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@editorialbot generate pdf

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👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@editorialbot
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Five most similar historical JOSS papers:

bmgarch: An R-Package for Bayesian Multivariate GARCH models
Submitting author: @ph-rast
Handling editor: @jbytecode (Active)
Reviewers: @ChristopherLucas, @mwt
Similarity score: 0.8415

genieR: An R package for inference of demographic history of phylogenies
Submitting author: @xiangfstats
Handling editor: @pjotrp (Retired)
Reviewers: @pboesu
Similarity score: 0.8325

rTASSEL: An R interface to TASSEL for analyzing genomic diversity
Submitting author: @btmonier
Handling editor: @fboehm (Active)
Reviewers: @tkchafin, @tomsing1
Similarity score: 0.8309

GeneNetwork: framework for web-based genetics
Submitting author: @pjotrp
Handling editor: @arfon (Active)
Reviewers: @krother, @agarie
Similarity score: 0.8264

rigr: Regression, Inference, and General Data Analysis Tools in R
Submitting author: @yiqunchen
Handling editor: @osorensen (Active)
Reviewers: @stefanocoretta, @tomsing1
Similarity score: 0.8156

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

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👋 @mhu48, @vankesteren, @wjakethompson, would any of you be willing to review this submission for JOSS? We carry out our checklist-driven reviews here in GitHub issues and follow these guidelines: https://joss.readthedocs.io/en/latest/review_criteria.html

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I don't have any experience with behavior genetics, so I'm would not be able to give feedback on the accuracy/quality of the methods. I could review for R package best practices (e.g., test coverage, documentation, etc.) if that would be helpful.

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mhu48 commented Jan 10, 2024 via email

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osorensen commented Jan 10, 2024 •
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I don't have any experience with behavior genetics, so I'm would not be able to give feedback on the accuracy/quality of the methods. I could review for R package best practices (e.g., test coverage, documentation, etc.) if that would be helpful.

Thanks @wjakethompson, that would be really helpful. The R package best practices are also the main aspects of a JOSS review, so I'll add you as a reviewer.

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@editorialbot add @wjakethompson as reviewer

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@wjakethompson added to the reviewers list!

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@editorialbot add @mhu48 as reviewer

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@mhu48 added to the reviewers list!

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@editorialbot start review

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OK, I've started the review over in #6203.

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