[PRE REVIEW]: GeoClimate : a Geospatial processing toolbox for environmental and climate studies

[whedon]

Submitting author: @ebocher (Erwan Bocher)
Repository: https://github.com/orbisgis/geoclimate/
Version: 1.0.0-SNAPSHOT
Editor: @elbeejay
Reviewers: @abhishekvp, @omshinde, @arbennett
Managing EiC: Arfon Smith

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

Status

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HTML: <a href="https://joss.theoj.org/papers/2b216ea704e5ee9d61a8208463c17ce1"><img src="https://joss.theoj.org/papers/2b216ea704e5ee9d61a8208463c17ce1/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/2b216ea704e5ee9d61a8208463c17ce1/status.svg)](https://joss.theoj.org/papers/2b216ea704e5ee9d61a8208463c17ce1)

Author instructions

Thanks for submitting your paper to JOSS @ebocher. Currently, there isn't an JOSS editor assigned to your paper.

@ebocher if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

[arfon]

@ebocher - thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

[ebocher]

@arfon thanks for the comment. hugoledoux will be a very good candidate to review the paper.
Best regards

[kthyng]

@whedon check repo

[whedon]

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@whedon commands

[kthyng]

@whedon check repository

[whedon]

Software report (experimental):

github.com/AlDanial/cloc v 1.88  T=0.92 s (104.1 files/s, 165298.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
XML                              5             14             16          78777
SVG                              1              1              1          44890
Groovy                          37           1848           3232          15668
JSON                            32              5              0           4734
Scheme                           3              1              0            799
Maven                            5             29              7            761
SQL                              6            196            297            702
Markdown                         4             86              0            228
TeX                              1             11              0            147
YAML                             2              4              4             38
-------------------------------------------------------------------------------
SUM:                            96           2195           3557         146744
-------------------------------------------------------------------------------


Statistical information for the repository '79ba885c5d60828236c95119' was
gathered on 2021/07/14.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Bocher                           2             4              4            0.12
Elisabeth Le Saux                2           626            409           15.44
Palominos Sylvain                4             8             50            0.87
ebocher                         25          1389           1029           36.07
gpetit                          22          1652            343           29.76
jeremy                           1            22             22            0.66
jeremy-b                        50           604            441           15.59
nahtanojoal                      4            94              6            1.49

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
ebocher                     368           26.5          7.1                3.53
gpetit                      623           37.7         24.7               44.78
jeremy-b                    202           33.4         17.8                2.48
nahtanojoal                   2            2.1         26.5                0.00

[kthyng]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #3442 with the following error:

 /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:456:in `parse': (b6385f2dafbdfd845db88e95/docs/articles/joss/paper.md): did not find expected key while parsing a block mapping at line 2 column 1 (Psych::SyntaxError)
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:456:in `parse_stream'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:390:in `parse'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:277:in `load'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:578:in `block in load_file'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:577:in `open'
	from /app/vendor/ruby-2.6.6/lib/ruby/2.6.0/psych.rb:577:in `load_file'
	from /app/vendor/bundle/ruby/2.6.0/bundler/gems/whedon-b63fc70cc085/lib/whedon.rb:127:in `load_yaml'
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	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/command.rb:27:in `run'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in `invoke_command'
	from /app/vendor/bundle/ruby/2.6.0/gems/thor-0.20.3/lib/thor.rb:387:in `dispatch'
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	from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `load'
	from /app/vendor/bundle/ruby/2.6.0/bin/whedon:23:in `<main>'

[ebocher]

@kthyng
Just to inform you that the PDF compiles using github action : https://github.com/orbisgis/geoclimate/actions/runs/989591342

[arfon]

@ebocher - please remove the blank ORCID lines from your paper by merging this pull request: orbisgis/geoclimate#609

Also it looks like you're not citing your references properly. The section in your paper.md after the # References heading should be empty and citations to other works will automatically appear in there if you cite them in the paper text. You can read how to do that here

[ebocher]

thanks @arfon I will fix it

[j3r3m1]

@ebocher - please remove the blank ORCID lines from your paper by merging this pull request: orbisgis/geoclimate#609

Done

Also it looks like you're not citing your references properly. The section in your paper.md after the # References heading should be empty and citations to other works will automatically appear in there if you cite them in the paper text. You can read how to do that here

The reason was that we put footnote in the reference section since it did not work otherwise. I removed them and add them in the body of the article but I am not sure it works as expected. You can let us know before we merge or we can merge and then see. The pull request is here:
orbisgis/geoclimate#610

[kthyng]

Hi @fraukewiese are you interested in editing this submission?

[kthyng]

@whedon invite @fraukewiese as editor

[whedon]

@fraukewiese has been invited to edit this submission.

[ebocher]

@whedon generate pdf

[whedon]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[fraukewiese]

I will be OoO until beginning of August, so I would prefer if somebody else could edit this submission.

[danielskatz]

👋 @elbeejay - Would you be able to edit this submission?

[danielskatz]

@whedon invite @elbeejay as editor

[whedon]

@elbeejay has been invited to edit this submission.

[elbeejay]

@whedon assign @elbeejay as editor

[whedon]

OK, the editor is @elbeejay

[abhishekvp]

Hi! thanks for the review invitation @elbeejay. I looked through the journal's conflict of interest policy. I declare that I do not have any conflict of interest. I hereby agree to review this submission for JOSS. Thanks!

[elbeejay]

@whedon add @abhishekvp as reviewer

[whedon]

OK, @abhishekvp is now a reviewer

[omshinde]

Hi @elbeejay! Thanks for the review invitation. I confirm that I do not hold any conflict of interest for this submission and would be happy to review this submission for JOSS. Regards!

[nuest]

@elbeejay Thanks for considering me - I am not able to perform a review at this point in time, as I'm taking a leave of absence until March next year.

[arbennett]

Hi @elbeejay - I would be happy to review this! I also do not hold any conflict of interest for this submission.

[elbeejay]

Great, thank you all. We will move this forward to review.

[elbeejay]

@whedon add @omshinde as reviewer

[whedon]

OK, @omshinde is now a reviewer

[elbeejay]

@whedon add @arbennett as reviewer

[whedon]

OK, @arbennett is now a reviewer

[elbeejay]

@whedon start review

[whedon]

OK, I've started the review over in #3541.