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[PRE REVIEW]: Delira: A High-Level Framework for Deep Learning in Medical Image Analysis #1484

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whedon opened this issue May 30, 2019 · 26 comments

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@whedon
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whedon commented May 30, 2019

Submitting author: @haarburger (Christoph Haarburger)
Repository: https://github.com/justusschock/delira
Version: v0.3.2
Editor: @mbobra
Reviewers: @PingjunChen, @acolum

Author instructions

Thanks for submitting your paper to JOSS @haarburger. Currently, there isn't an JOSS editor assigned to your paper.

@haarburger if you have any suggestions for potential reviewers then please mention them here in this thread. In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission.

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands
@whedon
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whedon commented May 30, 2019

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@whedon commands

What happens now?

This submission is currently in a pre-review state which means we are waiting for an editor to be assigned and for them to find some reviewers for your submission. This may take anything between a few hours to a couple of weeks. Thanks for your patience 😸

You can help the editor by looking at this list of potential reviewers to identify individuals who might be able to review your submission (please start at the bottom of the list). Also, feel free to suggest individuals who are not on this list by mentioning their GitHub handles here.

@whedon
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whedon commented May 30, 2019

Attempting PDF compilation. Reticulating splines etc...

@whedon
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whedon commented May 30, 2019

PDF failed to compile for issue #1484 with the following error:

Can't find any papers to compile :-(

@kyleniemeyer
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Hi @haarburger, our build system can't find your paper (neither can I). Did you prepare a paper according to our author guidelines?

@haarburger
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haarburger commented May 31, 2019

The paper was still in a non-master branch. I'll report back here after it is merged to master.

@whedon
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whedon commented May 31, 2019

Here are some things you can ask me to do:

# List Whedon's capabilities
@whedon commands

# List of editor GitHub usernames
@whedon list editors

# List of reviewers together with programming language preferences and domain expertise
@whedon list reviewers

EDITORIAL TASKS

# Compile the paper
@whedon generate pdf

# Compile the paper from alternative branch
@whedon generate pdf from branch custom-branch-name

# Ask Whedon to check the references for missing DOIs
@whedon check references

@haarburger
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@whedon generate pdf

@whedon
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whedon commented May 31, 2019

Attempting PDF compilation. Reticulating splines etc...

@whedon
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whedon commented May 31, 2019

PDF failed to compile for issue #1484 with the following error:

Could not find bibliography file: paper.bib
Error running filter pandoc-citeproc:
Filter returned error status 1
Looks like we failed to compile the PDF

@haarburger
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@whedon generate pdf

@whedon
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whedon commented May 31, 2019

Attempting PDF compilation. Reticulating splines etc...

@whedon
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whedon commented May 31, 2019

@kyleniemeyer
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Great, thanks @haarburger! We'll proceed now.

@kyleniemeyer
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@whedon assign @mbobra as editor

@whedon
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whedon commented May 31, 2019

OK, the editor is @mbobra

@mbobra
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mbobra commented May 31, 2019

@haarburger Would you like to suggest any reviewers from this list?

@haarburger
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I suggest @PingjunChen, @sealhuang and @fernandoandreotti (in random order) from the list.

@mbobra
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mbobra commented Jun 3, 2019

@sealhuang and @fernandoandreotti Are you available to review this submission for JOSS?

@mbobra
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mbobra commented Jun 4, 2019

@haarburger Just an update: I'm working on finding additional reviewers!

@fernandoandreotti
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Sorry guys, it seems interesting but unfortunately I've been quite busy.

@mbobra
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mbobra commented Jun 5, 2019

@whedon assign @PingjunChen as reviewer

@whedon whedon assigned mbobra and unassigned mbobra Jun 5, 2019
@whedon
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whedon commented Jun 5, 2019

OK, the reviewer is @PingjunChen

@mbobra
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mbobra commented Jun 5, 2019

@whedon add @acolum as reviewer

@whedon whedon assigned mbobra and unassigned mbobra Jun 5, 2019
@whedon
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whedon commented Jun 5, 2019

OK, @acolum is now a reviewer

@mbobra
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mbobra commented Jun 5, 2019

@whedon start review magic-word=bananas

@whedon
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whedon commented Jun 5, 2019

OK, I've started the review over in #1488. Feel free to close this issue now!

@mbobra mbobra closed this as completed Jun 5, 2019
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