Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Creating pull request for 10.21105.joss.04905 #3928

Merged
merged 7 commits into from
Jan 31, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
358 changes: 358 additions & 0 deletions joss.04905/10.21105.joss.04905.crossref.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,358 @@
<?xml version="1.0" encoding="UTF-8"?>
<doi_batch xmlns="http://www.crossref.org/schema/5.3.1"
xmlns:ai="http://www.crossref.org/AccessIndicators.xsd"
xmlns:rel="http://www.crossref.org/relations.xsd"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
version="5.3.1"
xsi:schemaLocation="http://www.crossref.org/schema/5.3.1 http://www.crossref.org/schemas/crossref5.3.1.xsd">
<head>
<doi_batch_id>20230131T154104-f3659a9ceb5cba6f21ac3d5dab5594e114e3418f</doi_batch_id>
<timestamp>20230131154104</timestamp>
<depositor>
<depositor_name>JOSS Admin</depositor_name>
<email_address>[email protected]</email_address>
</depositor>
<registrant>The Open Journal</registrant>
</head>
<body>
<journal>
<journal_metadata>
<full_title>Journal of Open Source Software</full_title>
<abbrev_title>JOSS</abbrev_title>
<issn media_type="electronic">2475-9066</issn>
<doi_data>
<doi>10.21105/joss</doi>
<resource>https://joss.theoj.org/</resource>
</doi_data>
</journal_metadata>
<journal_issue>
<publication_date media_type="online">
<month>01</month>
<year>2023</year>
</publication_date>
<journal_volume>
<volume>8</volume>
</journal_volume>
<issue>81</issue>
</journal_issue>
<journal_article publication_type="full_text">
<titles>
<title>fieldcompare: A Python package for regression testing
simulation results</title>
</titles>
<contributors>
<person_name sequence="first" contributor_role="author">
<given_name>Dennis</given_name>
<surname>Gläser</surname>
<ORCID>https://orcid.org/0000-0001-9646-881X</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Timo</given_name>
<surname>Koch</surname>
<ORCID>https://orcid.org/0000-0003-4776-5222</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Sören</given_name>
<surname>Peters</surname>
<ORCID>https://orcid.org/0000-0001-5236-3776</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Sven</given_name>
<surname>Marcus</surname>
<ORCID>https://orcid.org/0000-0003-3689-2162</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Bernd</given_name>
<surname>Flemisch</surname>
<ORCID>https://orcid.org/0000-0001-8188-620X</ORCID>
</person_name>
</contributors>
<publication_date>
<month>01</month>
<day>31</day>
<year>2023</year>
</publication_date>
<pages>
<first_page>4905</first_page>
</pages>
<publisher_item>
<identifier id_type="doi">10.21105/joss.04905</identifier>
</publisher_item>
<ai:program name="AccessIndicators">
<ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
</ai:program>
<rel:program>
<rel:related_item>
<rel:description>Software archive</rel:description>
<rel:inter_work_relation relationship-type="references" identifier-type="doi">10.5281/zenodo.7588449</rel:inter_work_relation>
</rel:related_item>
<rel:related_item>
<rel:description>GitHub review issue</rel:description>
<rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/openjournals/joss-reviews/issues/4905</rel:inter_work_relation>
</rel:related_item>
</rel:program>
<doi_data>
<doi>10.21105/joss.04905</doi>
<resource>https://joss.theoj.org/papers/10.21105/joss.04905</resource>
<collection property="text-mining">
<item>
<resource mime_type="application/pdf">https://joss.theoj.org/papers/10.21105/joss.04905.pdf</resource>
</item>
</collection>
</doi_data>
<citation_list>
<citation key="meshio">
<article_title>MeshIO: Input/output for many mesh
formats</article_title>
<author>Schlömer</author>
<cYear>2022</cYear>
<unstructured_citation>Schlömer, N. (2022). MeshIO:
Input/output for many mesh formats. Published on GitHub
https://github.com/nschloe/meshio and also accessible via Software
Heritage Permalink.</unstructured_citation>
</citation>
<citation key="fieldcompare_action">
<article_title>GitHub action for
FieldCompare</article_title>
<author>Gläser</author>
<journal_title>GitHub repository</journal_title>
<cYear>2022</cYear>
<unstructured_citation>Gläser, D. (2022). GitHub action for
FieldCompare. In GitHub repository. GitHub.
https://github.com/dglaeser/fieldcompare-action</unstructured_citation>
</citation>
<citation key="schroeder_2006_VTK">
<volume_title>The visualization toolkit</volume_title>
<author>Schroeder</author>
<cYear>2006</cYear>
<unstructured_citation>Schroeder, W., Martin, K., &amp;
Lorensen, B. (2006). The visualization toolkit.
Kitware.</unstructured_citation>
</citation>
<citation key="dumux_2011">
<article_title>DuMux: DUNE for multi-{phase, component,
scale, physics, …} flow and transport in porous media</article_title>
<author>Flemisch</author>
<journal_title>Advances in Water Resources</journal_title>
<issue>9</issue>
<volume>34</volume>
<doi>10.1016/j.advwatres.2011.03.007</doi>
<issn>0309-1708</issn>
<cYear>2011</cYear>
<unstructured_citation>Flemisch, B., Darcis, M.,
Erbertseder, K., Faigle, B., Lauser, A., Mosthaf, K., Müthing, S.,
Nuske, P., Tatomir, A., Wolff, M., &amp; Helmig, R. (2011). DuMux: DUNE
for multi-{phase, component, scale, physics, …} flow and transport in
porous media. Advances in Water Resources, 34(9), 1102–1112.
https://doi.org/10.1016/j.advwatres.2011.03.007</unstructured_citation>
</citation>
<citation key="dune_testtools">
<article_title>System testing in scientific numerical
software frameworks using the example of DUNE</article_title>
<author>Kempf</author>
<volume>5</volume>
<doi>10.11588/ans.2017.1.27447</doi>
<cYear>2017</cYear>
<unstructured_citation>Kempf, D., &amp; Koch, T. (2017).
System testing in scientific numerical software frameworks using the
example of DUNE. 5, 151–168.
https://doi.org/10.11588/ans.2017.1.27447</unstructured_citation>
</citation>
<citation key="Kochetaldumux2021">
<article_title>DuMux 3 - an open-source simulator for
solving flow and transport problems in porous media with a focus on
model coupling</article_title>
<author>Koch</author>
<journal_title>Computers &amp; Mathematics with
Applications</journal_title>
<volume>81</volume>
<doi>10.1016/j.camwa.2020.02.012</doi>
<cYear>2021</cYear>
<unstructured_citation>Koch, T., Gläser, D., Weishaupt, K.,
&amp; others. (2021). DuMux 3 - an open-source simulator for solving
flow and transport problems in porous media with a focus on model
coupling. Computers &amp; Mathematics with Applications, 81, 423–443.
https://doi.org/10.1016/j.camwa.2020.02.012</unstructured_citation>
</citation>
<citation key="bastian2008">
<article_title>A generic grid interface for parallel and
adaptive scientific computing. Part II: Implementation and tests in
DUNE</article_title>
<author>Bastian</author>
<journal_title>Computing</journal_title>
<issue>2</issue>
<volume>82</volume>
<doi>10.1007/s00607-008-0004-9</doi>
<cYear>2008</cYear>
<unstructured_citation>Bastian, P., Blatt, M., Dedner, A.,
Engwer, C., Klöfkorn, R., Kornhuber, R., Ohlberger, M., &amp; Sander, O.
(2008). A generic grid interface for parallel and adaptive scientific
computing. Part II: Implementation and tests in DUNE. Computing, 82(2),
121–138.
https://doi.org/10.1007/s00607-008-0004-9</unstructured_citation>
</citation>
<citation key="Dune2021">
<article_title>The Dune framework: Basic concepts and recent
developments</article_title>
<author>Bastian</author>
<journal_title>Computers &amp; Mathematics with
Applications</journal_title>
<volume>81</volume>
<doi>10.1016/j.camwa.2020.06.007</doi>
<cYear>2021</cYear>
<unstructured_citation>Bastian, P., Blatt, M., Dedner, A.,
Dreier, N.-A., Engwer, C., Fritze, R., Gräser, C., Grüninger, C., Kempf,
D., Klöfkorn, R., Ohlberger, M., &amp; Sander, O. (2021). The Dune
framework: Basic concepts and recent developments. Computers &amp;
Mathematics with Applications, 81, 75–112.
https://doi.org/10.1016/j.camwa.2020.06.007</unstructured_citation>
</citation>
<citation key="dealII94">
<article_title>The deal.II library, version
9.4</article_title>
<author>Arndt</author>
<journal_title>Journal of Numerical
Mathematics</journal_title>
<issue>3</issue>
<volume>30</volume>
<doi>10.1515/jnma-2022-0054</doi>
<cYear>2022</cYear>
<unstructured_citation>Arndt, D., Bangerth, W., Feder, M.,
Fehling, M., Gassmöller, R., Heister, T., Heltai, L., Kronbichler, M.,
Maier, M., Munch, P., Pelteret, J.-P., Sticko, S., Turcksin, B., &amp;
Wells, D. (2022). The deal.II library, version 9.4. Journal of Numerical
Mathematics, 30(3), 231–246.
https://doi.org/10.1515/jnma-2022-0054</unstructured_citation>
</citation>
<citation key="virtualfluids_2022">
<article_title>VirtualFluids</article_title>
<author>Kutscher</author>
<journal_title>GitLab repository</journal_title>
<cYear>2022</cYear>
<unstructured_citation>Kutscher, K., Schönherr, M., Geier,
M., Marcus, S., Peters, S., Linxweiler, J., Krafczyk, M., &amp;
Wellmann, A. (2022). VirtualFluids. In GitLab repository. GitLab.
https://git.rz.tu-bs.de/irmb/virtualfluids</unstructured_citation>
</citation>
<citation key="Zenodo2013">
<article_title>Zenodo</article_title>
<author>European Organization For Nuclear Research</author>
<doi>10.25495/7GXK-RD71</doi>
<cYear>2013</cYear>
<unstructured_citation>European Organization For Nuclear
Research, &amp; OpenAIRE. (2013). Zenodo. CERN.
https://doi.org/10.25495/7GXK-RD71</unstructured_citation>
</citation>
<citation key="maric_tomislav_2021_5603255">
<article_title>Computing volume fractions and signed
distances from arbitrary surfaces on unstructured meshes</article_title>
<author>Maric</author>
<doi>10.5281/zenodo.5603255</doi>
<cYear>2021</cYear>
<unstructured_citation>Maric, T., Tolle, T., &amp;
Gruending, D. (2021). Computing volume fractions and signed distances
from arbitrary surfaces on unstructured meshes (Version 2.0) [Data set].
Zenodo. https://doi.org/10.5281/zenodo.5603255</unstructured_citation>
</citation>
<citation key="tolle2022trisurfaceimmersion">
<article_title>triSurfaceImmersion: Computing volume
fractions and signed distances from triangulated surfaces immersed in
unstructured meshes</article_title>
<author>Tolle</author>
<journal_title>Computer Physics
Communications</journal_title>
<volume>273</volume>
<doi>10.1016/j.cpc.2021.108249</doi>
<cYear>2022</cYear>
<unstructured_citation>Tolle, T., Gründing, D., Bothe, D.,
&amp; Marić, T. (2022). triSurfaceImmersion: Computing volume fractions
and signed distances from triangulated surfaces immersed in unstructured
meshes. Computer Physics Communications, 273, 108249.
https://doi.org/10.1016/j.cpc.2021.108249</unstructured_citation>
</citation>
<citation key="suresoft2022">
<article_title>SURESOFT: Towards sustainable research
software</article_title>
<author>Blech</author>
<doi>10.24355/dbbs.084-202210121528-0</doi>
<cYear>2022</cYear>
<unstructured_citation>Blech, C., Dreyer, N., Friebel, M.,
Jacob, C., Shamil Jassim, M., Jehl, L., Kapitza, R., Krafczyk, M.,
Kürner, T., Langer, S. C., Linxweiler, J., Mahhouk, M., Marcus, S.,
Messadi, I., Peters, S., Pilawa, J.-M., Sreekumar, H. K., Strötgen, R.,
Stump, K., … Wolter, M. (2022). SURESOFT: Towards sustainable research
software.
https://doi.org/10.24355/dbbs.084-202210121528-0</unstructured_citation>
</citation>
<citation key="openfoam">
<article_title>OpenFOAM</article_title>
<cYear>2023</cYear>
<unstructured_citation>OpenFOAM. (2023). Website:
https://www.openfoam.com/, code repository:
https://develop.openfoam.com/Development/openfoam.</unstructured_citation>
</citation>
<citation key="argo_repo">
<article_title>argo</article_title>
<author>Tolle</author>
<cYear>2023</cYear>
<unstructured_citation>Tolle, T., &amp; Maric, T. (2023).
argo. Published on GitLab https://gitlab.com/leia-methods/argo and also
accessible via Software Heritage Permalink.</unstructured_citation>
</citation>
<citation key="suresoft_hpc_workflow_2022">
<article_title>SURESOFT HPC workflow</article_title>
<author>Peters</author>
<journal_title>GitLab repository</journal_title>
<cYear>2022</cYear>
<unstructured_citation>Peters, S., &amp; Marcus, S. (2022).
SURESOFT HPC workflow. In GitLab repository. GitLab.
https://git.rz.tu-bs.de/soe.peters/suresoft-hpc-workflow</unstructured_citation>
</citation>
<citation key="marcus_hpcrocket_2022">
<volume_title>hpc-rocket</volume_title>
<author>Marcus</author>
<doi>10.5281/zenodo.7469695</doi>
<cYear>2022</cYear>
<unstructured_citation>Marcus, S. (2022). hpc-rocket
(Version 0.3.1) [Computer software]. Zenodo.
https://doi.org/10.5281/zenodo.7469695</unstructured_citation>
</citation>
<citation key="ieee754">
<article_title>IEEE standard for binary floating-point
arithmetic</article_title>
<journal_title>ANSI/IEEE Std 754-1985</journal_title>
<doi>10.1109/IEEESTD.1985.82928</doi>
<cYear>1985</cYear>
<unstructured_citation>IEEE standard for binary
floating-point arithmetic. (1985). ANSI/IEEE Std 754-1985, 1–20.
https://doi.org/10.1109/IEEESTD.1985.82928</unstructured_citation>
</citation>
<citation key="fenics">
<article_title>FEniCS</article_title>
<cYear>2023</cYear>
<unstructured_citation>FEniCS. (2023). Website:
https://fenicsproject.org/, code repository:
https://github.com/FEniCS.</unstructured_citation>
</citation>
<citation key="fenicsbook2012">
<volume_title>Automated solution of differential equations
by the finite element method</volume_title>
<author>A. Logg</author>
<doi>10.1007/978-3-642-23099-8</doi>
<cYear>2012</cYear>
<unstructured_citation>A. Logg, G. N. W. et al, K.-A.
Mardal. (2012). Automated solution of differential equations by the
finite element method. Springer.
https://doi.org/10.1007/978-3-642-23099-8</unstructured_citation>
</citation>
</citation_list>
</journal_article>
</journal>
</body>
</doi_batch>
Loading