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Joined arrays in ADIOS2 #3096

Joined arrays in ADIOS2

Joined arrays in ADIOS2 #3096

Workflow file for this run

name: 🍏 macOS
on: [push, pull_request]
concurrency:
group: ${{ github.ref }}-${{ github.head_ref }}-macos
cancel-in-progress: true
jobs:
# TODO: (old Travis-CI coverage)
# appleclang9_py37_nompi_h5
# appleclang10_py37_h5_ad2_libcpp
# appleclang11_nopy_nompi_h5_ad2
appleclang14_py_mpi_h5_ad2:
runs-on: macos-latest
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v3
- name: Install
run: |
rm -rf /usr/local/bin/2to3
set +e
brew update
brew install adios2 || true
brew install hdf5-mpi || true
brew install python || true
python3 -m pip install -U mpi4py numpy pandas
set -e
- name: Build
env: {CXXFLAGS: -Werror, MACOSX_DEPLOYMENT_TARGET: 11.0}
# 10.14+ due to std::visit
# 10.15+ due to std::filesystem in toml11
# https://cibuildwheel.readthedocs.io/en/stable/cpp_standards/#macos-and-deployment-target-versions
# 11.0+ for arm64/aarch64 (M1/M2) builds
run: |
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=ON \
-DopenPMD_USE_MPI=ON \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_ADIOS2=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DMPIEXEC_EXECUTABLE=".github/workflows/mpirun_workaround.sh"
cmake --build build --parallel 3
ctest --test-dir build --verbose
appleclang13_py:
runs-on: macos-11
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v3
- name: Install
env: {MACOSX_DEPLOYMENT_TARGET: 11.0}
run: |
set +e
python3 -m pip install -U numpy pandas
set -e
- name: Build
env: {CXXFLAGS: -Werror, MACOSX_DEPLOYMENT_TARGET: 11.0}
# 10.14+ due to std::visit
# 10.15+ due to std::filesystem in toml11
# https://cibuildwheel.readthedocs.io/en/stable/cpp_standards/#macos-and-deployment-target-versions
# 11.0+ for arm64/aarch64 (M1/M2) builds
run: |
share/openPMD/download_samples.sh build
cmake -S . -B build \
-DopenPMD_USE_PYTHON=ON \
-DopenPMD_USE_MPI=OFF \
-DopenPMD_USE_HDF5=OFF \
-DopenPMD_USE_ADIOS2=OFF \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DPython_EXECUTABLE=$(which python3)
cmake --build build --parallel 3
ctest --test-dir build --verbose
rm -rf build/samples
share/openPMD/download_samples.sh build
OPENPMD2_ADIOS2_USE_GROUP_TABLE=1 ctest --test-dir build --verbose
# TODO: apple_conda_ompi_all (similar to conda_ompi_all on Linux)
# both OpenMPI and MPICH cause startup (MPI_Init) issues on GitHub Actions