pr-checks: run hdf5 testsuite #8
Workflow file for this run
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| name: HDF5 | |
| on: [pull_request] | |
| jobs: | |
| hdf5-testsuite: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install -y --no-install-recommends wget | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Build Open MPI | |
| run: | | |
| ./autogen.pl | |
| ./configure --prefix=/opt/openmpi --with-pmix=internal --with-prrte=internal --with-hwloc=internal --with-libevent=internal --disable-mpi-fortran --disable-oshmem | |
| make -j ${nproc} && make install | |
| - name: Install HDF5 | |
| run: | | |
| wget https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz | |
| tar -xzf hdf5.tar.gz | |
| mv hdf5-1* hdf5 | |
| cd hdf5 | |
| export PATH=/opt/openmpi/bin:${PATH} | |
| export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH} | |
| echo ${PATH} | |
| echo ${LD_LIBRARY_PATH} | |
| ./configure --enable-parallel | |
| make -j ${nproc} | |
| - name: Tweak MPI | |
| run: | | |
| # Tweak MPI | |
| mca_params="$HOME/.openmpi/mca-params.conf" | |
| mkdir -p "$(dirname "$mca_params")" | |
| echo rmaps_base_oversubscribe = true >> "$mca_params" | |
| - name: Run testsuite (ompio) | |
| run: | | |
| export PATH=/opt/openmpi/bin:${PATH} | |
| export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH} | |
| echo ${PATH} | |
| echo ${LD_LIBRARY_PATH} | |
| pwd | |
| HDF5TestExpress=0 mpirun -np 4 ./hdf5/testpar/t_shapesame | |
| mpirun -np 4 ./hdf5/testpar/t_filters_parallel | |
| mpirun -np 4 ./hdf5/testpar/testphdf5 | |
| timeout-minutes: 10 | |
| - name: Run testsuite (romio) | |
| run: | | |
| export PATH=/opt/openmpi/bin:${PATH} | |
| export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH} | |
| echo ${PATH} | |
| echo ${LD_LIBRARY_PATH} | |
| HDF5TestExpress=0 mpirun --mca io ^ompio -np 4 ./hdf5/testpar/t_shapesame | |
| mpirun --mca io ^ompio -np 4 ./hdf5/testpar/t_filters_parallel | |
| mpirun --mca io ^ompio -np 4 ./hdf5/testpar/testphdf5 | |
| timeout-minutes: 10 |