Add tags field

app/controllers/home_controller.rb

@@ -1,5 +1,3 @@
-# frozen_string_literal: true
-
 class HomeController < ApplicationController
   layout :determine_layout
 
@@ -44,13 +42,29 @@ def index
 
     # Calculate BioPortal summary statistics
     @ont_count = @ontologies.length
-    @cls_count = LinkedData::Client::Models::Metrics.all.map { |m| m.classes.to_i }.sum
+    @cls_count = LinkedData::Client::Models::Metrics.all.map {|m| m.classes.to_i}.sum
+
     @individuals_count = LinkedData::Client::Models::Metrics.all.map {|m| m.individuals.to_i}.sum
+    if $RESOURCE_INDEX_DISABLED == false
+      begin
+        @resources = LinkedData::Client::ResourceIndex.resources # application_controller
+        @ri_resources = @resources.length
+        @ri_record_count = @resources.map {|r| r.count}.sum
+      rescue
+        @resources = []
+        @ri_resources = 0
+        @ri_record_count = 0
+      end
+      @ri_stats = LinkedData::Client::ResourceIndex.annotation_counts
+      @direct_annotations = @ri_stats[:total][:direct]
+      @direct_expanded_annotations = @ri_stats[:total][:ancestors]
+    end
+
     @prop_count = 36286
     @map_count = total_mapping_count
     @analytics = LinkedData::Client::Analytics.last_month
 
-    @ontology_names = @ontologies.map { |ont| ["#{ont.name} (#{ont.acronym})", ont.acronym] }
+    @ontology_names = @ontologies.map{ |ont| ["#{ont.name} (#{ont.acronym})", ont.acronym] }
 
     @anal_ont_names = {}
     @anal_ont_numbers = []
@@ -68,10 +82,22 @@ def render_layout_partial
     render partial: "layouts/#{partial}"
   end
 
+  def release
+    redirect_to :controller => 'home', :action => 'help'
+  end
+
   def help
     # Show the header/footer or not
-    layout = params[:pop].eql?('true') ? 'popup' : 'ontology'
-    render layout: layout
+    layout = params[:pop].eql?("true") ? "popup" : "ontology"
+    render :layout => layout
+  end
+
+  def recommender
+
+  end
+
+  def annotate
+
   end
 
   def all_resources
@@ -83,30 +109,44 @@ def all_resources
 
   def feedback
     # Show the header/footer or not
-    feedback_layout = params[:pop].eql?('true') ? 'popup' : 'ontology'
+    feedback_layout = params[:pop].eql?("true") ? "popup" : "ontology"
 
     # We're using a hidden form field to trigger for error checking
     # If sim_submit is nil, we know the form hasn't been submitted and we should
     # bypass form processing.
     if params[:sim_submit].nil?
-      render layout: feedback_layout
+      render :layout => feedback_layout
       return
     end
 
+    @tags = []
+    if not params[:bug].nil? || params[:bug].empty?
+      @tags << "Bug"
+    end
+    if not params[:proposition].nil? || params[:proposition].empty?
+      @tags << "Proposition"
+    end
+    if not params[:question].nil? || params[:question].empty?
+      @tags << "Question"
+    end
+    if not params[:bug].nil? || params[:bug].empty?
+      @tags << "ontology-submissions-request"
+    end
+
     @errors = []
 
     if params[:name].nil? || params[:name].empty?
-      @errors << 'Please include your name'
+      @errors << "Please include your name"
     end
-    if params[:email].nil? || params[:email].length < 1 || !params[:email].match(/^[A-Z0-9._%+-]+@[A-Z0-9.-]+\.[A-Z]{2,4}$/i)
-      @errors << 'Please include your email'
+    if params[:email].nil? || params[:email].length <1 || !params[:email].match(/^[A-Z0-9._%+-]+@[A-Z0-9.-]+\.[A-Z]{2,4}$/i)
+      @errors << "Please include your email"
     end
     if params[:comment].nil? || params[:comment].empty?
-      @errors << 'Please include your comment'
+      @errors << "Please include your comment"
     end
     if using_captcha? && !session[:user]
-      unless verify_recaptcha
-        @errors << 'Please fill in the proper text from the supplied image'
+      if !verify_recaptcha
+        @errors << "Please fill in the proper text from the supplied image"
       end
     end
 
@@ -115,51 +155,53 @@ def feedback
       return
     end
 
-    Notifier.feedback(params[:name], params[:email], params[:comment], params[:location]).deliver_now
+    Notifier.feedback(params[:name],params[:email],params[:comment],params[:location], @tags).deliver_now
 
-    if params[:pop].eql?('true')
-      render 'feedback_complete', layout: 'popup'
+    if params[:pop].eql?("true")
+      render "feedback_complete", layout: "popup"
     else
-      flash[:notice] = 'Feedback has been sent'
+      flash[:notice]="Feedback has been sent"
       redirect_to_home
     end
   end
 
   def user_intention_survey
-    render partial: 'user_intention_survey', layout: false
+    render :partial => "user_intention_survey", :layout => false
   end
 
   def site_config
     render json: bp_config_json
   end
 
   def account
-    @title = 'Account Information'
+    @title = "Account Information"
     if session[:user].nil?
-      redirect_to controller: 'login', action: 'index', redirect: '/account'
+      redirect_to :controller => 'login', :action => 'index', :redirect => "/account"
       return
     end
 
-    @user = LinkedData::Client::Models::User.get(session[:user].id, include: 'all')
+    @user = LinkedData::Client::Models::User.get(session[:user].id, include: "all")
 
     @user_ontologies = @user.customOntology
     @user_ontologies ||= []
 
-    onts = LinkedData::Client::Models::Ontology.all
-    @admin_ontologies = onts.select { |o| o.administeredBy.include? @user.id }
+    onts = LinkedData::Client::Models::Ontology.all;
+    @admin_ontologies = onts.select {|o| o.administeredBy.include? @user.id }
 
-    projects = LinkedData::Client::Models::Project.all
-    @user_projects = projects.select { |p| p.creator.include? @user.id }
+    projects = LinkedData::Client::Models::Project.all;
+    @user_projects = projects.select {|p| p.creator.include? @user.id }
 
-    render 'users/show'
+    render "users/show"
   end
 
-  def feedback_complete; end
+  def feedback_complete
+  end
 
-  def validate_ontology_file_show; end
+  def validate_ontology_file_show
+  end
 
   def validate_ontology_file
-    response = LinkedData::Client::HTTP.post('/validate_ontology_file', ontology_file: params[:ontology_file])
+    response = LinkedData::Client::HTTP.post("/validate_ontology_file", ontology_file: params[:ontology_file])
     @process_id = response.process_id
   end
 
@@ -170,11 +212,12 @@ def validate_ontology_file
   # All other groups come after, with agriculture in the last position.
   def organize_groups
     # Reference: https://lildude.co.uk/sort-an-array-of-strings-by-severity
-    acronyms = %w[UMLS OBO_Foundry WHO-FIC CTSA caBIG]
+    acronyms = ["UMLS", "OBO_Foundry", "WHO-FIC", "CTSA", "caBIG"]
     size = @groups.size
     @groups.sort_by! { |g| acronyms.find_index(g.acronym[/(UMLS|OBO_Foundry|WHO-FIC|CTSA|caBIG)/]) || size }
 
-    others, agriculture = @groups.partition { |g| g.acronym != 'CGIAR' }
+    others, agriculture = @groups.partition { |g| g.acronym != "CGIAR" }
     @groups = others + agriculture
   end
+
 end