add usage method to the agent models (#109)

ontoportal-lirmm · Nov 3, 2023 · b49ad10 · b49ad10
1 parent e9ff8c1
commit b49ad10
Show file tree

Hide file tree

Showing 3 changed files with 93 additions and 16 deletions.
diff --git a/Gemfile.lock b/Gemfile.lock
@@ -213,6 +213,7 @@ GEM
 
 PLATFORMS
   x86_64-darwin-21
+  x86_64-linux
 
 DEPENDENCIES
   activesupport (~> 4)
@@ -248,4 +249,4 @@ DEPENDENCIES
   webmock
 
 BUNDLED WITH
-   2.4.12
+   2.3.26
diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -16,13 +16,38 @@ class Agent < LinkedData::Models::Base
       attribute :identifiers, namespace: :adms, property: :identifier, enforce: %i[Identifier list unique_identifiers]
       attribute :affiliations, enforce: %i[Agent list is_organization], namespace: :org, property: :memberOf
       attribute :creator, type: :user, enforce: [:existence]
-
       embed :identifiers, :affiliations
       embed_values affiliations: LinkedData::Models::Agent.goo_attrs_to_load + [identifiers: LinkedData::Models::AgentIdentifier.goo_attrs_to_load]
+      serialize_methods :usages
 
       write_access :creator
       access_control_load :creator
 
+      def usages
+        id = self.id
+        q = Goo.sparql_query_client.select(:id, :property, :status).distinct
+               .from(LinkedData::Models::OntologySubmission.uri_type)
+               .where(
+                 [:id,
+                  RDF::URI.new('http://www.w3.org/1999/02/22-rdf-syntax-ns#type'),
+                  LinkedData::Models::OntologySubmission.uri_type
+                 ],
+                 [:id,
+                  LinkedData::Models::OntologySubmission.attribute_uri(:submissionStatus),
+                  :status
+                 ]
+               )
+
+        q = q.union([[:id, :property, id]])
+        q.filter("?status = <#{RDF::URI.new(LinkedData::Models::SubmissionStatus.id_prefix + 'RDF')}> || ?status = <#{RDF::URI.new(LinkedData::Models::SubmissionStatus.id_prefix + 'UPLOADED')}>")
+        data = q.each_solution.map { |x| [x[:id], x[:property], x[:status]] }
+        data = data.group_by(&:shift)
+        data.transform_values do |values|
+          r = values.select { |value| value.last['RDF'] }
+          r = values.select { |value| value.last['UPLOADED'] } if r.empty?
+          r.map(&:first)
+        end
+      end
 
       def unique_identifiers(inst, attr)
         inst.bring(attr) if inst.bring?(attr)

diff --git a/test/models/test_agent.rb b/test/models/test_agent.rb
@@ -3,8 +3,9 @@
 class TestAgent < LinkedData::TestCase
 
   def self.before_suite
+    backend_4s_delete
     self.new("before_suite").teardown
-    @@user1 = LinkedData::Models::User.new(:username => "user11111", :email => "[email protected]" )
+    @@user1 = LinkedData::Models::User.new(:username => "user11111", :email => "[email protected]")
     @@user1.passwordHash = "some random pass hash"
     @@user1.save
   end
@@ -15,32 +16,28 @@ def self.after_suite
     @@user1.delete
   end
 
-
-
   def test_agent_no_valid
 
-    @agents =[
-      LinkedData::Models::Agent.new(name:"name 0", email:"[email protected]", agentType: 'organization',creator: @@user1 ),
-      LinkedData::Models::Agent.new(name:"name 1", email:"[email protected]", agentType: 'person', creator: @@user1 ),
-      LinkedData::Models::Agent.new(name:"name 2", email:"[email protected]",  agentType: 'person', creator: @@user1 )
+    @agents = [
+      LinkedData::Models::Agent.new(name: "name 0", email: "[email protected]", agentType: 'organization', creator: @@user1),
+      LinkedData::Models::Agent.new(name: "name 1", email: "[email protected]", agentType: 'person', creator: @@user1),
+      LinkedData::Models::Agent.new(name: "name 2", email: "[email protected]", agentType: 'person', creator: @@user1)
     ]
     @identifiers = [
       LinkedData::Models::AgentIdentifier.new(notation: '000h6jb29', schemaAgency: 'ROR', creator: @@user1),
       LinkedData::Models::AgentIdentifier.new(notation: '000h6jb29', schemaAgency: 'ORCID', creator: @@user1),
     ]
 
-    @identifiers.each {|i| i.save}
+    @identifiers.each { |i| i.save }
 
-    affiliations = @agents[0..2].map{ |a| a.save }
+    affiliations = @agents[0..2].map { |a| a.save }
     agent = @agents.last
     agent.affiliations = affiliations
 
-
     refute agent.valid?
     refute_nil agent.errors[:affiliations][:is_organization]
 
-    affiliations.each{|x| x.delete}
-
+    affiliations.each { |x| x.delete }
 
     agents = @agents[0..2].map do |a|
       a.identifiers = @identifiers
@@ -54,8 +51,7 @@ def test_agent_no_valid
     refute second_agent.valid?
     refute_nil second_agent.errors[:identifiers][:unique_identifiers]
 
-
-    @identifiers.each{|i| i.delete}
+    @identifiers.each { |i| i.delete }
   end
 
   def test_identifier_find
@@ -69,6 +65,7 @@ def test_identifier_find
 
     id.delete
   end
+
   def test_identifier_no_valid
     refute LinkedData::Models::AgentIdentifier.new(notation: 'https://ror.org/000h6jb29', schemaAgency: 'ROR', creator: @@user1).valid?
     id = LinkedData::Models::AgentIdentifier.new(notation: '000h6jb29"', schemaAgency: 'ROR', creator: @@user1)
@@ -82,4 +79,58 @@ def test_identifier_no_valid
     id.delete
   end
 
+  def test_agent_usages
+    count, acronyms, ontologies = create_ontologies_and_submissions(ont_count: 3, submission_count: 1,
+                                                                    process_submission: false)
+
+    o1 = ontologies[0]
+    o2 = ontologies[1]
+    o3 = ontologies[2]
+    sub1 = o1.latest_submission(status: :any)
+    sub2 = o2.latest_submission(status: :any)
+    sub3 = o3.latest_submission(status: :any)
+    refute_nil sub1
+    refute_nil sub2
+    refute_nil sub3
+
+    agents = [LinkedData::Models::Agent.new(name: "name 0", email: "[email protected]", agentType: 'organization', creator: @@user1).save,
+              LinkedData::Models::Agent.new(name: "name 1", email: "[email protected]", agentType: 'organization', creator: @@user1).save,
+              LinkedData::Models::Agent.new(name: "name 2", email: "[email protected]", agentType: 'person', creator: @@user1).save]
+
+    sub1.hasCreator = [agents.last]
+    sub1.publisher = agents[0..1]
+    sub1.fundedBy = [agents[0]]
+    sub1.bring_remaining
+    assert sub1.valid?
+    sub1.save
+
+    sub2.hasCreator = [agents.last]
+    sub2.endorsedBy = [agents[0]]
+    sub2.fundedBy = agents[0..1]
+    sub2.bring_remaining
+    assert sub2.valid?
+    sub2.save
+
+    usages = agents[0].usages
+
+    assert_equal 2, usages.size
+
+    refute_nil usages[sub1.id]
+    assert_equal usages[sub1.id].map(&:to_s).sort, ["http://purl.org/dc/terms/publisher", "http://xmlns.com/foaf/0.1/fundedBy"].sort
+    refute_nil usages[sub2.id].map(&:to_s).sort, ["http://omv.ontoware.org/2005/05/ontology#endorsedBy", "http://xmlns.com/foaf/0.1/fundedBy"].sort
+
+    sub3.copyrightHolder = agents[0]
+    sub3.bring_remaining
+    sub3.save
+
+    usages = agents[0].usages
+    assert_equal 3, usages.size
+
+    refute_nil usages[sub1.id]
+    assert_equal usages[sub1.id].map(&:to_s).sort, ["http://purl.org/dc/terms/publisher", "http://xmlns.com/foaf/0.1/fundedBy"].sort
+    assert_equal usages[sub2.id].map(&:to_s).sort, ["http://omv.ontoware.org/2005/05/ontology#endorsedBy", "http://xmlns.com/foaf/0.1/fundedBy"].sort
+    assert_equal usages[sub3.id].map(&:to_s), ["http://schema.org/copyrightHolder"]
+
+    agents.each{|x| x.delete}
+  end
 end