Added gene type submission #396
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jfkonecn
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Oct 24, 2024
* Added core submission logic * Added Save Gene Logic (#385) * Added name changes to review logic (#393) * Added name change to core submission logic * Added missing unit tests * Addessed PR comments * Removed unneeded uuid * added comments to collectUUIDs function * Added gene type submission (#396) * Can now delete evidences (#398) * fixed logging in * fixed build errors * updated drugs mapping * updated drugs mapping * Add releaseGene param when saving gene data to core * Update to allow save all genes * Fix excludedRCTs * Add method to undo gene release * Use reviewed content only (#430) * Use reviewed content only * Ignore if in review added state * Save Genes now checks if added * Delete parent node if added field is true * Fixed build * don't save undefined * Addressed PR comments * Addressed PR comments * Feature/fix submit to core (#439) * Handle when Instant json element is a json object The completedDate in the DB could be ISO 8601 string, or json object. I think this has to do with the recent spring boot upgrade, but I can't find the specific version of the change. I will handle both scenarios for now * Textarea in review mode should fit text content (#427) * Update pom version * Fix reject cancer type name review (#428) * Add reference to oncokb sop alteration nomenclature in add mutation modal helper (#432) * Update pom version * Avoid fetching management info repeatedly * Do not rerender the side bar when loading session The getSession is an async method which updates the loading status. * Fix drug code not selectable (#435) * Bump actions to latest version (#438) * resize text area when input changes (#440) * add sorting by firebase index (#443) * Delete mutation/tumor/treatment as last step to avoid stale index (#444) * Review no longer removes data for core submission * Added comments to useLastReviewOnly * Add children review paths * Fixed approve all * Fixed UI tests * Fixed UI tests * break in middle of word to fix collapsible title overlfow (#442) * Change searchEntities to readHandler instead of updateHandler (#445) * Fixed submit all * Fixed submission bug * Fixed data validation tool (#447) * Allow curating mutation summary (#433) * Fixed submit all * Fixed tests * Fixed gene type submissions * Removed last review check inside getevidences and gene type * Added mutation summary --------- Co-authored-by: Hongxin <[email protected]> Co-authored-by: Hongxin <[email protected]> Co-authored-by: Calvin Lu <[email protected]> Co-authored-by: oncokb-bot <[email protected]> Co-authored-by: bprize15 <[email protected]> * Added Vus submissions to core (#456) * Make core API call non-blocking (#454) * Handle when Instant json element is a json object The completedDate in the DB could be ISO 8601 string, or json object. I think this has to do with the recent spring boot upgrade, but I can't find the specific version of the change. I will handle both scenarios for now * Textarea in review mode should fit text content (#427) * Update pom version * Fix reject cancer type name review (#428) * Add reference to oncokb sop alteration nomenclature in add mutation modal helper (#432) * Update pom version * Avoid fetching management info repeatedly * Do not rerender the side bar when loading session The getSession is an async method which updates the loading status. * Fix drug code not selectable (#435) * Bump actions to latest version (#438) * resize text area when input changes (#440) * add sorting by firebase index (#443) * Delete mutation/tumor/treatment as last step to avoid stale index (#444) * break in middle of word to fix collapsible title overlfow (#442) * Change searchEntities to readHandler instead of updateHandler (#445) * Fixed data validation tool (#447) * Allow curating mutation summary (#433) * Parse protein change case insensitive (#441) * Fix adding CDx biomarker association (#450) * use firebase properties directly in backend (#451) * fix references tab (#452) * Added Heap (#448) * Added Heap * Updated CSP * Reduce width so sidebar does not go offscren (#446) * allow comma in mutation name when transcripts present (#453) * allow comma in mutation name when transcripts present * add missing colon * rename transcripts to reference genomes * Make core API call non-blocking * Add tests for stale indices check (#455) * Added loading icon when review is accepted * Update setup-java action * Update pom version * Put feature flag in app config * Now showing loading icon on accept all --------- Co-authored-by: Hongxin <[email protected]> Co-authored-by: Hongxin <[email protected]> Co-authored-by: Calvin Lu <[email protected]> Co-authored-by: oncokb-bot <[email protected]> Co-authored-by: bprize15 <[email protected]> --------- Co-authored-by: Hongxin <[email protected]> Co-authored-by: Hongxin <[email protected]> Co-authored-by: Calvin Lu <[email protected]> Co-authored-by: oncokb-bot <[email protected]> Co-authored-by: bprize15 <[email protected]>
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