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omnideconv

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  1. immunedeconv immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    R 479 101

  2. omnideconv omnideconv Public

    Unified access to several second-generation deconvolution methods

    HTML 65 12

  3. spacedeconv spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    R 40 7

  4. SimBu SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    R 14 1

  5. deconvBench deconvBench Public

    Comparison of 2nd generation deconvolution methods implemented in omnideconv

    R 5

  6. deconvExplorer deconvExplorer Public

    R 3 1

Repositories

Showing 10 of 20 repositories
  • spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    omnideconv/spacedeconv’s past year of commit activity
    R 40 GPL-3.0 7 2 0 Updated Feb 11, 2025
  • BayesPrism Public Forked from Danko-Lab/BayesPrism
    omnideconv/BayesPrism’s past year of commit activity
    HTML 0 47 0 0 Updated Feb 11, 2025
  • omnideconv Public

    Unified access to several second-generation deconvolution methods

    omnideconv/omnideconv’s past year of commit activity
    HTML 65 GPL-3.0 12 17 1 Updated Feb 10, 2025
  • omnideconv.github.io Public
    omnideconv/omnideconv.github.io’s past year of commit activity
    CSS 2 0 0 1 Updated Feb 6, 2025
  • deconvBench Public

    Comparison of 2nd generation deconvolution methods implemented in omnideconv

    omnideconv/deconvBench’s past year of commit activity
    R 5 0 2 1 Updated Jan 30, 2025
  • immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    omnideconv/immunedeconv’s past year of commit activity
    R 479 101 32 (1 issue needs help) 4 Updated Jan 23, 2025
  • deconvExplorer Public
    omnideconv/deconvExplorer’s past year of commit activity
    R 3 1 5 2 Updated Dec 20, 2024
  • SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    omnideconv/SimBu’s past year of commit activity
    R 14 GPL-3.0 1 5 2 Updated Dec 19, 2024
  • methylDeconv Public

    Runs and compares different methylation based cell type deconvolution algorithms

    omnideconv/methylDeconv’s past year of commit activity
    R 2 0 0 0 Updated Dec 2, 2024
  • AutoGeneS Public Forked from theislab/AutoGeneS
    omnideconv/AutoGeneS’s past year of commit activity
    Jupyter Notebook 0 MIT 9 0 0 Updated Oct 2, 2024
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