-Author: Olivia Zhang

SRAdb Web Application:

Overview slides

• Available here

Installation

library(devtools)
install_github('oliviazz/SRAdb-app')

Usage

library(ShinySRAdb)
ShinySRAdb()

Dependencies

• SRAdb
• shinythemes
• shinyFiles
• DT
• RgraphViz
• R.utils

Functions:

• Query Sequence Repository Archive Using Advanced Text Search
• Get information about SRA and FASTQ data files
• Perform FASTQ Dump for runs
• Export Table Results as Excel
• Create Entity Graph Visualizations for SRA Data