Add ADMM

examples/solvers/admm_tomography.py

@@ -0,0 +1,85 @@
+"""Total variation tomography using linearized ADMM.
+
+In this example we solve the optimization problem
+
+    min_x  ||A(x) - y||_2^2 + lam * ||grad(x)||_1
+
+Where ``A`` is a parallel beam ray transform, ``grad`` the spatial
+gradient and ``y`` given noisy data.
+
+The problem is rewritten in decoupled form as
+
+    min_x g(L(x))
+
+with a separable sum ``g`` of functionals and the stacked operator ``L``:
+
+    g(z) = ||z_1 - g||_2^2 + lam * ||z_2||_1,
+
+               ( A(x)    )
+    z = L(x) = ( grad(x) ).
+
+See the documentation of the `admm_linearized` solver for further details.
+"""
+
+import numpy as np
+import odl
+
+# --- Set up the forward operator (ray transform) --- #
+
+# Reconstruction space: functions on the rectangle [-20, 20]^2
+# discretized with 300 samples per dimension
+reco_space = odl.uniform_discr(
+    min_pt=[-20, -20], max_pt=[20, 20], shape=[300, 300], dtype='float32')
+
+# Make a parallel beam geometry with flat detector, using 360 angles
+geometry = odl.tomo.parallel_beam_geometry(reco_space, num_angles=180)
+
+# Create the forward operator
+ray_trafo = odl.tomo.RayTransform(reco_space, geometry)
+
+# --- Generate artificial data --- #
+
+# Create phantom and noisy projection data
+phantom = odl.phantom.shepp_logan(reco_space, modified=True)
+data = ray_trafo(phantom)
+data += odl.phantom.white_noise(ray_trafo.range) * np.mean(data) * 0.1
+
+# --- Set up the inverse problem --- #
+
+# Gradient operator for the TV part
+grad = odl.Gradient(reco_space)
+
+# Stacking of the two operators
+L = odl.BroadcastOperator(ray_trafo, grad)
+
+# Data matching and regularization functionals
+data_fit = odl.solvers.L2NormSquared(ray_trafo.range).translated(data)
+reg_func = 0.015 * odl.solvers.L1Norm(grad.range)
+g = odl.solvers.SeparableSum(data_fit, reg_func)
+
+# We don't use the f functional, setting it to zero
+f = odl.solvers.ZeroFunctional(L.domain)
+
+# --- Select parameters and solve using ADMM --- #
+
+# Estimated operator norm, add 10 percent for some safety margin
+op_norm = 1.1 * odl.power_method_opnorm(L, maxiter=20)
+
+niter = 200  # Number of iterations
+sigma = 2.0  # Step size for g.proximal
+tau = sigma / op_norm ** 2  # Step size for f.proximal
+
+# Optionally pass a callback to the solver to display intermediate results
+callback = (odl.solvers.CallbackPrintIteration(step=10) &
+            odl.solvers.CallbackShow(step=10))
+
+# Choose a starting point
+x = L.domain.zero()
+
+# Run the algorithm
+odl.solvers.admm_linearized(x, f, g, L, tau, sigma, niter, callback=callback)
+
+# Display images
+phantom.show(title='Phantom')
+data.show(title='Simulated data (Sinogram)')
+x.show(title='TV reconstruction', force_show=True)

examples/solvers/lbfgs_tomography.py

@@ -56,8 +56,8 @@
 hessinv_estimate = odl.ScalingOperator(reco_space, 1 / opnorm ** 2)
 
 # Optionally pass callback to the solver to display intermediate results
-callback = (odl.solvers.CallbackPrintIteration() &
-            odl.solvers.CallbackShow())
+callback = (odl.solvers.CallbackPrintIteration(step=10) &
+            odl.solvers.CallbackShow(step=10))
 
 # Pick parameters
 maxiter = 20

examples/solvers/pdhg_tomography.py

@@ -72,8 +72,8 @@
 sigma = 1.0 / op_norm  # Step size for the dual variable
 
 # Optionally pass callback to the solver to display intermediate results
-callback = (odl.solvers.CallbackPrintIteration() &
-            odl.solvers.CallbackShow())
+callback = (odl.solvers.CallbackPrintIteration(step=10) &
+            odl.solvers.CallbackShow(step=10))
 
 # Choose a starting point
 x = op.domain.zero()

odl/solvers/nonsmooth/__init__.py

@@ -15,6 +15,9 @@
 from .proximal_operators import *
 __all__ += proximal_operators.__all__
 
+from .admm import *
+__all__ += admm.__all__
+
 from .primal_dual_hybrid_gradient import *
 __all__ += primal_dual_hybrid_gradient.__all__
 

odl/solvers/nonsmooth/admm.py

@@ -0,0 +1,161 @@
+"""Alternating Direction method of Multipliers (ADMM) method variants."""
+
+from __future__ import division
+from odl.operator import Operator, OpDomainError
+
+
+__all__ = ('admm_linearized',)
+
+
+def admm_linearized(x, f, g, L, tau, sigma, niter, **kwargs):
+    """Generic linearized ADMM method for convex problems.
+
+    ADMM stands for "Alternating Direction Method of Multipliers" and
+    is a popular convex optimization method. This variant solves problems
+    of the form ::
+
+        min_x [ f(x) + g(Lx) ]
+
+    with convex ``f`` and ``g``, and a linear operator ``L``. See Section
+    4.4 of `[PB2014] <http://web.stanford.edu/~boyd/papers/prox_algs.html>`_
+    and the Notes for more mathematical details.
+
+    Parameters
+    ----------
+    x : ``L.domain`` element
+        Starting point of the iteration, updated in-place.
+    f, g : `Functional`
+        The functions ``f`` and ``g`` in the problem definition. They
+        need to implement the ``proximal`` method.
+    L : linear `Operator`
+        The linear operator that is composed with ``g`` in the problem
+        definition. It must fulfill ``L.domain == f.domain`` and
+        ``L.range == g.domain``.
+    tau, sigma : positive float
+        Step size parameters for the update of the variables.
+    niter : non-negative int
+        Number of iterations.
+
+    Other Parameters
+    ----------------
+    callback : callable, optional
+        Function called with the current iterate after each iteration.
+
+    Notes
+    -----
+    Given :math:`x^{(0)}` (the provided ``x``) and
+    :math:`u^{(0)} = z^{(0)} = 0`, linearized ADMM applies the following
+    iteration:
+
+    .. math::
+        x^{(k+1)} &= \mathrm{prox}_{\\tau f} \\left[
+            x^{(k)} - \sigma^{-1}\\tau L^*\\big(
+                L x^{(k)} - z^{(k)} + u^{(k)}
+            \\big)
+        \\right]
+
+        z^{(k+1)} &= \mathrm{prox}_{\sigma g}\\left(
+            L x^{(k+1)} + u^{(k)}
+        \\right)
+
+        u^{(k+1)} &= u^{(k)} + L x^{(k+1)} - z^{(k+1)}
+
+    The step size parameters :math:`\\tau` and :math:`\sigma` must satisfy
+
+    .. math::
+        0 < \\tau < \\frac{\sigma}{\|L\|^2}
+
+    to guarantee convergence.
+
+    The name "linearized ADMM" comes from the fact that in the
+    minimization subproblem for the :math:`x` variable, this variant
+    uses a linearization of a quadratic term in the augmented Lagrangian
+    of the generic ADMM, in order to make the step expressible with
+    the proximal operator of :math:`f`.
+
+    Another name for this algorithm is *split inexact Uzawa method*.
+
+    References
+    ----------
+    [PB2014] Parikh, N and Boyd, S. *Proximal Algorithms*. Foundations and
+    Trends in Optimization, 1(3) (2014), pp 123-231.
+    """
+    if not isinstance(L, Operator):
+        raise TypeError('`op` {!r} is not an `Operator` instance'
+                        ''.format(L))
+
+    if x not in L.domain:
+        raise OpDomainError('`x` {!r} is not in the domain of `op` {!r}'
+                            ''.format(x, L.domain))
+
+    tau, tau_in = float(tau), tau
+    if tau <= 0:
+        raise ValueError('`tau` must be positive, got {}'.format(tau_in))
+
+    sigma, sigma_in = float(sigma), sigma
+    if sigma <= 0:
+        raise ValueError('`sigma` must be positive, got {}'.format(sigma_in))
+
+    niter, niter_in = int(niter), niter
+    if niter < 0 or niter != niter_in:
+        raise ValueError('`niter` must be a non-negative integer, got {}'
+                         ''.format(niter_in))
+
+    # Callback object
+    callback = kwargs.pop('callback', None)
+    if callback is not None and not callable(callback):
+        raise TypeError('`callback` {} is not callable'.format(callback))
+
+    # Initialize range variables
+    z = L.range.zero()
+    u = L.range.zero()
+
+    # Temporary for Lx + u [- z]
+    tmp_ran = L(x)
+    # Temporary for L^*(Lx + u - z)
+    tmp_dom = L.domain.element()
+
+    # Store proximals since their initialization may involve computation
+    prox_tau_f = f.proximal(tau)
+    prox_sigma_g = g.proximal(sigma)
+
+    for _ in range(niter):
+        # tmp_ran has value Lx^k here
+        # tmp_dom <- L^*(Lx^k + u^k - z^k)
+        tmp_ran += u
+        tmp_ran -= z
+        L.adjoint(tmp_ran, out=tmp_dom)
+
+        # x <- x^k - (tau/sigma) L^*(Lx^k + u^k - z^k)
+        x.lincomb(1, x, -tau / sigma, tmp_dom)
+        # x^(k+1) <- prox[tau*f](x)
+        prox_tau_f(x, out=x)
+
+        # tmp_ran <- Lx^(k+1)
+        L(x, out=tmp_ran)
+        # z^(k+1) <- prox[sigma*g](Lx^(k+1) + u^k)
+        prox_sigma_g(tmp_ran + u, out=z)  # 1 copy here
+
+        # u^(k+1) = u^k + Lx^(k+1) - z^(k+1)
+        u += tmp_ran
+        u -= z
+
+        if callback is not None:
+            callback(x)
+
+
+def admm_linearized_simple(x, f, g, L, tau, sigma, niter, **kwargs):
+    """Non-optimized version of ``admm_linearized``.
+
+    This function is intended for debugging. It makes a lot of copies and
+    performs no error checking.
+    """
+    callback = kwargs.pop('callback', None)
+    z = L.range.zero()
+    u = L.range.zero()
+    for _ in range(niter):
+        x[:] = f.proximal(tau)(x - tau / sigma * L.adjoint(L(x) + u - z))
+        z = g.proximal(sigma)(L(x) + u)
+        u = L(x) + u - z
+        if callback is not None:
+            callback(x)

odl/test/solvers/nonsmooth/admm_test.py

@@ -0,0 +1,76 @@
+# Copyright 2014-2017 The ODL contributors
+#
+# This file is part of ODL.
+#
+# This Source Code Form is subject to the terms of the Mozilla Public License,
+# v. 2.0. If a copy of the MPL was not distributed with this file, You can
+# obtain one at https://mozilla.org/MPL/2.0/.
+
+"""Unit tests for ADMM."""
+
+from __future__ import division
+import odl
+from odl.solvers import admm_linearized, Callback
+
+from odl.util.testutils import all_almost_equal, noise_element
+
+
+def test_admm_lin_input_handling():
+    """Test to see that input is handled correctly."""
+
+    space = odl.uniform_discr(0, 1, 10)
+
+    L = odl.ZeroOperator(space)
+    f = g = odl.solvers.ZeroFunctional(space)
+
+    # Check that the algorithm runs. With the above operators and functionals,
+    # the algorithm should not modify the initial value.
+    x0 = noise_element(space)
+    x = x0.copy()
+    niter = 3
+
+    admm_linearized(x, f, g, L, tau=1.0, sigma=1.0, niter=niter)
+
+    assert x == x0
+
+    # Check that a provided callback is actually called
+    class CallbackTest(Callback):
+        was_called = False
+
+        def __call__(self, *args, **kwargs):
+            self.was_called = True
+
+    callback = CallbackTest()
+    assert not callback.was_called
+    admm_linearized(x, f, g, L, tau=1.0, sigma=1.0, niter=niter,
+                    callback=callback)
+    assert callback.was_called
+
+
+def test_admm_lin_l1():
+    """Verify that the correct value is returned for l1 dist optimization.
+
+    Solves the optimization problem
+
+        min_x ||x - data_1||_1 + 0.5 ||x - data_2||_1
+
+    which has optimum value data_1 since the first term dominates.
+    """
+    space = odl.rn(5)
+
+    L = odl.IdentityOperator(space)
+
+    data_1 = odl.util.testutils.noise_element(space)
+    data_2 = odl.util.testutils.noise_element(space)
+
+    f = odl.solvers.L1Norm(space).translated(data_1)
+    g = 0.5 * odl.solvers.L1Norm(space).translated(data_2)
+
+    x = space.zero()
+    admm_linearized(x, f, g, L, tau=1.0, sigma=2.0, niter=10)
+
+    assert all_almost_equal(x, data_1, places=2)
+
+
+if __name__ == '__main__':
+    odl.util.test_file(__file__)