Merge pull request #2390 from obophenotype/issue-2348

Add taxon-specific GCIs for existential relations.

src/ontology/uberon-edit.obo

@@ -1862,7 +1862,7 @@ xref: XAO:0003000
 xref: ZFA:0000037
 is_a: UBERON:0000465 ! material anatomical entity
 relationship: existence_ends_during_or_before UBERON:0000071 ! death stage
-relationship: existence_starts_during_or_after UBERON:0000106 ! zygote stage
+relationship: existence_starts_during_or_after UBERON:0000106 {gci_relation="in_taxon", gci_filler="NCBITaxon:33208"} ! zygote stage
 
 [Term]
 id: UBERON:0000062
@@ -1890,7 +1890,7 @@ is_a: UBERON:0010000 ! multicellular anatomical structure
 disjoint_from: UBERON:0002095 {source="PMID:28192867"} ! mesentery
 disjoint_from: UBERON:0034921 ! multi organ part structure
 relationship: capable_of GO:0008150 ! biological_process
-relationship: existence_starts_during_or_after UBERON:0000111 ! organogenesis stage
+relationship: existence_starts_during_or_after UBERON:0000111 {gci_filler="NCBITaxon:6072", gci_relation="in_taxon"} ! organogenesis stage
 relationship: has_boundary UBERON:0006984 ! anatomical surface
 relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} ! Xenoturbella
 relationship: part_of UBERON:0000467 ! anatomical system
@@ -6972,7 +6972,7 @@ xref: Wikipedia:Organ_system
 xref: XAO:0003002
 xref: ZFA:0001439
 is_a: UBERON:0000061 ! anatomical structure
-relationship: existence_starts_during_or_after UBERON:0000111 ! organogenesis stage
+relationship: existence_starts_during_or_after UBERON:0000111 {gci_filler="NCBITaxon:6072", gci_relation="in_taxon"} ! organogenesis stage
 relationship: has_part UBERON:0000062 ! organ
 relationship: part_of UBERON:0000468 ! multicellular organism
 relationship: seeAlso EHDAA2:0001330
@@ -7228,11 +7228,11 @@ xref: ZFA:0001308
 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure
 relationship: has_part UBERON:0000075 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! subdivision of skeletal system
 relationship: has_part UBERON:0034929 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! external soft tissue zone
-relationship: overlaps UBERON:0001009 ! circulatory system
-relationship: overlaps UBERON:0001015 ! musculature
-relationship: overlaps UBERON:0001016 ! nervous system
-relationship: overlaps UBERON:0001434 ! skeletal system
-relationship: overlaps UBERON:0002416 ! integumental system
+relationship: overlaps UBERON:0001009 {gci_filler="NCBITaxon:33213", gci_relation="in_taxon"} ! circulatory system
+relationship: overlaps UBERON:0001015 {gci_filler="NCBITaxon:6072", gci_relation="in_taxon"} ! musculature
+relationship: overlaps UBERON:0001016 {gci_filler="NCBITaxon:6072", gci_relation="in_taxon"} ! nervous system
+relationship: overlaps UBERON:0001434 {gci_filler="NCBITaxon:33213", gci_relation="in_taxon"} ! skeletal system
+relationship: overlaps UBERON:0002416 {gci_filler="NCBITaxon:6072", gci_relation="in_taxon"} ! integumental system
 relationship: part_of UBERON:0000468 ! multicellular organism
 property_value: editor_note "Reflects CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency" xsd:string
 
@@ -7307,7 +7307,7 @@ xref: XAO:0004005
 xref: ZFA:0000020
 intersection_of: UBERON:0005423 ! developing anatomical structure
 intersection_of: part_of UBERON:0016887 ! entire extraembryonic component
-relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage
+relationship: existence_starts_and_ends_during UBERON:0000068 {gci_filler="NCBITaxon:6072", gci_relation="in_taxon"} ! embryo stage
 
 [Term]
 id: UBERON:0000479
@@ -7384,7 +7384,7 @@ xref: XAO:0003037
 xref: ZFA:0001488
 is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure
 relationship: has_part UBERON:0000479 ! tissue
-relationship: part_of NCBITaxon:6072 ! Eumetazoa
+relationship: part_of NCBITaxon:6072 {gci_filler="NCBITaxon:6072", gci_relation="in_taxon"} ! Eumetazoa
 
 [Term]
 id: UBERON:0000482
@@ -67615,7 +67615,6 @@ xref: VHOG:0001723
 xref: XAO:0003041
 xref: ZFA:0000496
 is_a: UBERON:0000062 ! organ
-relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa
 property_value: curator_notes "this class was introduced for consistency with CARO. However, in this ontology we typically classify organs directly under 'organ' rather than subdividing into compound and simple organs" xsd:string
 
 [Term]